Variant report

Variant	rs72813879
Chromosome Location	chr2:56227310-56227311
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10518794	0.89[EUR][1000 genomes]
rs55676306	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55749412	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55811442	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55845766	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55912959	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56058144	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56195925	0.95[EUR][1000 genomes]
rs56309449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56412571	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72813864	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72813868	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72813873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72813875	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72813877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72813878	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72813880	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72813884	0.95[EUR][1000 genomes]
rs72813888	0.95[EUR][1000 genomes]
rs72813889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72813894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72813900	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72813901	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72813902	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72815903	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72815905	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72815906	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72815907	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72815909	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72815910	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72815912	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72815915	0.89[AMR][1000 genomes]
rs7600678	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv2757799	chr2:56178439-56472394	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	esv2759051	chr2:56178439-56472394	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56222000-56229600	Weak transcription	Fetal Stomach	stomach
2	chr2:56226000-56227600	Enhancers	Muscle Satellite Cultured Cells	--

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