Variant report

Variant	rs55816881
Chromosome Location	chr7:14794685-14794686
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs55764819	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56212561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73052903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73052907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73052908	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73052909	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73052910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73052913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73052917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73052962	1.00[AMR][1000 genomes]
rs73064713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73064716	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73064724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73064725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73064729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73064731	1.00[EUR][1000 genomes]
rs73064732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73064753	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73064764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73064770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73064779	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73068689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73068691	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73068699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73070729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73070732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73070751	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73070752	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73070758	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73070760	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73070764	1.00[EUR][1000 genomes]
rs73070767	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73070769	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73070771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73070773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73070775	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73070778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1031041	chr7:14624127-14999201	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv538741	chr7:14624127-14999201	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv887712	chr7:14717872-14829858	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1020722	chr7:14792114-14871907	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:14787400-14801400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:14793600-14794800	Enhancers	Muscle Satellite Cultured Cells	--
3	chr7:14793800-14794800	Enhancers	HUVEC	blood vessel
4	chr7:14794200-14794800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:14794200-14795200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:14794200-14796000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:14794600-14799400	Weak transcription	Osteobl	bone

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