Variant report

Variant	rs558232744
Chromosome Location	chr11:55044264-55044265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:55044220-55044270	SAEC	small airway:	n/a
2	chr11:55044220-55044270	IMR90	lung:	fetal
3	chr11:55044220-55044270	GM12878	blood:	n/a
4	chr11:55044220-55044270	HRCEpiC	kidney:	n/a
5	chr11:55044220-55044270	HMEC	breast:	n/a
6	chr11:55044220-55044270	ProgFib	skin:	n/a
7	chr11:55044220-55044270	U87	brain:	n/a
8	chr11:55044220-55044270	A549	lung:	n/a
9	chr11:55044220-55044270	HCF	heart:	n/a
10	chr11:55044220-55044270	AG09319	gingival:	n/a
11	chr11:55044220-55044270	MCF10A-Er-Src	breast:	n/a
12	chr11:55044220-55044270	SK-N-MC	brain:	n/a
13	chr11:55044220-55044270	LNCaP	prostate:	n/a
14	chr11:55044220-55044270	AG09309	skin:	n/a
15	chr11:55044220-55044270	GM12892	blood:	n/a
16	chr11:55044220-55044270	MCF-7	breast:	n/a
17	chr11:55044220-55044270	PFSK-1	brain:	n/a
18	chr11:55044220-55044270	RPTEC	kidney:	n/a
19	chr11:55044220-55044270	BE2_C	brain:	n/a
20	chr11:55044220-55044270	Hepatocyte	liver:	n/a
21	chr11:55044220-55044270	AG04449	skin:	fetal
22	chr11:55044220-55044270	NHDF-neo	bronchial:	n/a
23	chr11:55044220-55044270	ovcar-3	ovarian:	n/a
24	chr11:55044220-55044270	HepG2	liver:	n/a
25	chr11:55044220-55044270	HUVEC	blood vessel:	n/a
26	chr11:55044220-55044270	Caco-2	colon:	n/a
27	chr11:55044220-55044270	K562	blood:	n/a
28	chr11:55044220-55044270	GM12891	blood:	n/a
29	chr11:55044220-55044270	HCPEpiC	choroid plexus:	n/a
30	chr11:55044220-55044270	HIPEpiC	eye:	n/a
31	chr11:55044220-55044270	AG10803	skin:	n/a
32	chr11:55044220-55044270	PANC-1	pancreas:	n/a
33	chr11:55044220-55044270	GM06990	blood:	n/a
34	chr11:55044220-55044270	CMK	blood:	n/a
35	chr11:55044220-55044270	HAEpiC	amniotic membrane:	n/a
36	chr11:55044220-55044270	HEK293	kidney:	embryo
37	chr11:55044220-55044270	NHBE	bronchial:	n/a
38	chr11:55044220-55044270	SK-N-SH	brain:	n/a
39	chr11:55044220-55044270	SKMC	muscle:	n/a
40	chr11:55044220-55044270	GM19239	blood:	n/a
41	chr11:55044220-55044270	HRPEpiC	eye:	n/a
42	chr11:55044220-55044270	AG04450	lung:	fetal
43	chr11:55044220-55044270	SK-N-SH_RA	brain:	n/a
44	chr11:55044220-55044270	Hela-S3	cervix:	n/a
45	chr11:55044220-55044270	HPAEpiC	pulmonary alveolar:	n/a
46	chr11:55044220-55044270	HL-60	blood:	n/a
47	chr11:55044220-55044270	AoSMC	blood vessel:	n/a
48	chr11:55044220-55044270	H1-hESC	embryonic stem cell:	embryo
49	chr11:55044220-55044270	BJ	skin:	n/a
50	chr11:55044220-55044270	HRE	kidney:	n/a

No data

Variant related genes	Relation type
ENSG00000255110	CpG island

Extended variants
information (count: 23 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554617	chr11:54695707-55058198	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv554618	chr11:54695707-55111584	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2830215	chr11:54711990-55340379	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv1048711	chr11:54720811-55048272	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1045259	chr11:54720811-55051462	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1052399	chr11:54720811-55060520	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1048402	chr11:54720811-55148163	Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv1039155	chr11:54720811-55156607	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv1042875	chr11:54720811-55191418	ZNF genes & repeats Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	nsv1038336	chr11:54720811-55213281	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	nsv1052144	chr11:54720811-55438474	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
12	nsv1053949	chr11:54773881-55363328	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
13	nsv554662	chr11:54776794-55103617	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	nsv1051643	chr11:54826801-55363328	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
15	nsv524091	chr11:54875038-55522549	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
16	nsv427887	chr11:54900406-55088042	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
17	nsv832152	chr11:54990462-55082131	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
18	nsv983020	chr11:55028379-55050346	Weak transcription Enhancers Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
19	nsv321	chr11:55028767-55071259	Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
20	nsv1054262	chr11:55030215-55146638	Weak transcription ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
21	nsv554794	chr11:55032177-55076217	Enhancers Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
22	nsv554796	chr11:55034206-55076217	Active TSS Enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
23	nsv554797	chr11:55035411-55864161	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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