Variant report

Variant	rs55825113
Chromosome Location	chr19:37682425-37682426
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37672779..37674398-chr19:37681782..37683371,2	K562	blood:

Extended variants
information (count: 128 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10402907	0.86[EUR][1000 genomes]
rs10403718	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10403728	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10403975	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10406110	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10408085	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10408359	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10413360	0.86[EUR][1000 genomes]
rs10413385	0.89[EUR][1000 genomes]
rs10414520	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10419643	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10420330	0.88[EUR][1000 genomes]
rs10421509	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10853950	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11084874	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11084875	0.84[EUR][1000 genomes]
rs11666786	0.86[EUR][1000 genomes]
rs11879644	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11879645	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11881645	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12980849	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12984458	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1402468	0.91[EUR][1000 genomes]
rs1667377	0.83[EUR][1000 genomes]
rs1667378	0.81[EUR][1000 genomes]
rs1667379	0.83[EUR][1000 genomes]
rs1667380	0.84[EUR][1000 genomes]
rs17206540	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1818748	0.83[EUR][1000 genomes]
rs1829603	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2082009	0.83[EUR][1000 genomes]
rs2082010	0.83[EUR][1000 genomes]
rs2090805	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2118208	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2118209	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2263166	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2385373	0.85[EUR][1000 genomes]
rs2385374	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2385375	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2551049	0.81[EUR][1000 genomes]
rs2562585	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2562591	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2562607	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2595555	0.83[EUR][1000 genomes]
rs28528332	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2891754	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2891766	0.82[EUR][1000 genomes]
rs35162188	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35524127	0.83[EUR][1000 genomes]
rs35579954	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35998183	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36096221	0.83[EUR][1000 genomes]
rs3902013	0.82[EUR][1000 genomes]
rs3929570	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4239587	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4254428	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4414605	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4805199	0.86[EUR][1000 genomes]
rs4805201	0.91[EUR][1000 genomes]
rs4805202	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4805203	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4805204	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4805205	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4806407	0.87[EUR][1000 genomes]
rs4806408	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4806409	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4806411	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4806412	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56154134	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6510580	0.83[EUR][1000 genomes]
rs6510585	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6510588	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6510591	0.86[EUR][1000 genomes]
rs6510592	0.86[EUR][1000 genomes]
rs6510593	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs703531	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7245453	0.83[EUR][1000 genomes]
rs7245520	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7245882	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7246022	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7246720	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7246739	0.83[EUR][1000 genomes]
rs7248132	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7248948	0.83[EUR][1000 genomes]
rs7250507	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7253730	0.85[ASN][1000 genomes]
rs7255576	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7255724	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7256380	0.83[EUR][1000 genomes]
rs7257320	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7257633	0.86[EUR][1000 genomes]
rs7258360	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7258650	0.89[EUR][1000 genomes]
rs7259332	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7259915	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7260488	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7260599	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8099987	0.86[EUR][1000 genomes]
rs8105065	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8105621	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8108429	0.91[EUR][1000 genomes]
rs8108509	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8109501	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8110158	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8110796	0.86[EUR][1000 genomes]
rs8111285	0.86[EUR][1000 genomes]
rs8113822	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs826324	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs826325	0.85[EUR][1000 genomes]
rs826326	0.81[EUR][1000 genomes]
rs826327	0.83[EUR][1000 genomes]
rs826328	0.85[EUR][1000 genomes]
rs826329	0.83[EUR][1000 genomes]
rs826331	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
10	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
12	nsv911654	chr19:37487632-37758082	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
13	nsv911655	chr19:37646745-37758082	ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
14	esv3395218	chr19:37682236-37682710	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs55825113	ZNF585B	cis	Artery Tibial	GTEx

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37668000-37686000	ZNF genes & repeats	Liver	Liver
2	chr19:37672000-37686400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
3	chr19:37672200-37686000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:37672800-37686000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr19:37673200-37690600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr19:37673400-37685400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr19:37673800-37685600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr19:37675000-37701000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr19:37676600-37685200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr19:37676800-37683000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
11	chr19:37676800-37683400	ZNF genes & repeats	Fetal Lung	lung
12	chr19:37676800-37684600	ZNF genes & repeats	Fetal Muscle Leg	muscle
13	chr19:37676800-37686000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
14	chr19:37676800-37686000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
15	chr19:37677000-37683200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr19:37677000-37683400	ZNF genes & repeats	Fetal Brain Female	brain
17	chr19:37677000-37684800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
18	chr19:37677000-37685600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
19	chr19:37677000-37686000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr19:37677000-37686000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr19:37677000-37686000	Strong transcription	Placenta Amnion	Placenta Amnion
22	chr19:37677000-37686200	ZNF genes & repeats	Ovary	ovary
23	chr19:37677200-37682600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
24	chr19:37677200-37683000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
25	chr19:37677200-37683400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
26	chr19:37677200-37685400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr19:37677200-37687600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
28	chr19:37677400-37684600	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
29	chr19:37677400-37685000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
30	chr19:37678400-37685000	Strong transcription	Brain Anterior Caudate	brain
31	chr19:37678600-37684800	Strong transcription	Brain Cingulate Gyrus	brain
32	chr19:37678600-37686200	ZNF genes & repeats	Fetal Intestine Large	intestine
33	chr19:37678800-37684800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
34	chr19:37679000-37683000	ZNF genes & repeats	Aorta	Aorta
35	chr19:37679000-37683000	ZNF genes & repeats	Lung	lung
36	chr19:37679000-37684800	ZNF genes & repeats	Fetal Intestine Small	intestine
37	chr19:37679000-37685400	ZNF genes & repeats	Fetal Stomach	stomach
38	chr19:37679000-37700800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr19:37679800-37686400	Strong transcription	Brain Hippocampus Middle	brain
40	chr19:37680600-37682600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr19:37680600-37683000	Weak transcription	NHEK	skin
42	chr19:37680600-37685200	Strong transcription	Skeletal Muscle Male	skeletal muscle
43	chr19:37680600-37700800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr19:37680800-37682800	Weak transcription	Fetal Brain Male	brain
45	chr19:37680800-37683000	Weak transcription	Fetal Kidney	kidney
46	chr19:37680800-37683200	Weak transcription	Psoas Muscle	Psoas
47	chr19:37680800-37684400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr19:37680800-37685400	Strong transcription	Brain Inferior Temporal Lobe	brain
49	chr19:37680800-37685800	Strong transcription	Skeletal Muscle Female	skeletal muscle
50	chr19:37680800-37689800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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