Variant report

Variant	rs826325
Chromosome Location	chr19:37494482-37494483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 239 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:224)

rs_ID	r²[population]
rs1016216	0.86[EUR][1000 genomes]
rs10402907	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10403718	0.87[EUR][1000 genomes]
rs10403728	0.89[EUR][1000 genomes]
rs10403975	0.87[EUR][1000 genomes]
rs10406110	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs10408085	0.86[EUR][1000 genomes]
rs10408359	0.86[EUR][1000 genomes]
rs10413322	0.81[EUR][1000 genomes]
rs10413360	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10413385	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10414520	0.93[EUR][1000 genomes]
rs10419643	0.88[EUR][1000 genomes]
rs10420330	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10421398	0.87[EUR][1000 genomes]
rs10421415	0.87[EUR][1000 genomes]
rs10421509	0.93[EUR][1000 genomes]
rs10853950	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs1095490	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11084874	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs11084875	0.86[EUR][1000 genomes]
rs11666786	0.88[CEU][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11672848	0.82[ASN][1000 genomes]
rs11879644	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs11879645	0.88[EUR][1000 genomes]
rs11881645	0.93[EUR][1000 genomes]
rs12980849	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs12984458	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs1345748	0.87[EUR][1000 genomes]
rs1363752	0.87[EUR][1000 genomes]
rs1363753	0.83[EUR][1000 genomes]
rs1375476	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs1375477	0.83[EUR][1000 genomes]
rs1402468	0.96[CEU][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1449200	0.86[EUR][1000 genomes]
rs1449201	0.86[EUR][1000 genomes]
rs1579314	0.87[EUR][1000 genomes]
rs1612652	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs1621329	0.86[EUR][1000 genomes]
rs1623796	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs1624087	0.85[CEU][hapmap]
rs1625963	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs1644637	0.83[CEU][hapmap]
rs1644647	0.83[CEU][hapmap]
rs1644652	0.84[EUR][1000 genomes]
rs1644654	0.83[EUR][1000 genomes]
rs1644656	0.85[EUR][1000 genomes]
rs1644657	0.85[EUR][1000 genomes]
rs1644658	0.85[EUR][1000 genomes]
rs1644659	0.83[EUR][1000 genomes]
rs1644661	0.86[EUR][1000 genomes]
rs1644662	0.81[EUR][1000 genomes]
rs1644663	0.86[EUR][1000 genomes]
rs1644665	0.86[EUR][1000 genomes]
rs1644666	0.86[EUR][1000 genomes]
rs1644667	0.86[EUR][1000 genomes]
rs1644668	0.86[EUR][1000 genomes]
rs1644669	0.82[EUR][1000 genomes]
rs1644670	0.86[EUR][1000 genomes]
rs1644671	0.85[EUR][1000 genomes]
rs1644672	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs1644673	0.89[CEU][hapmap]
rs1644674	0.86[EUR][1000 genomes]
rs1644675	0.86[EUR][1000 genomes]
rs1644676	0.86[EUR][1000 genomes]
rs1644677	0.86[EUR][1000 genomes]
rs1644678	0.86[EUR][1000 genomes]
rs1644679	0.86[EUR][1000 genomes]
rs1644682	0.87[EUR][1000 genomes]
rs1644683	0.87[EUR][1000 genomes]
rs1644684	0.87[EUR][1000 genomes]
rs1644685	0.87[EUR][1000 genomes]
rs1644686	0.87[EUR][1000 genomes]
rs1644687	0.87[EUR][1000 genomes]
rs1644688	0.87[EUR][1000 genomes]
rs1644689	0.87[EUR][1000 genomes]
rs1644690	0.87[EUR][1000 genomes]
rs1644691	0.83[EUR][1000 genomes]
rs1644693	0.87[EUR][1000 genomes]
rs1644695	0.87[EUR][1000 genomes]
rs1644698	0.87[EUR][1000 genomes]
rs1667330	0.82[CEU][hapmap]
rs1667333	0.82[CEU][hapmap]
rs1667335	0.83[CEU][hapmap]
rs1667336	0.83[EUR][1000 genomes]
rs1667337	0.84[EUR][1000 genomes]
rs1667341	0.80[EUR][1000 genomes]
rs1667342	0.85[EUR][1000 genomes]
rs1667344	0.85[EUR][1000 genomes]
rs1667346	0.85[EUR][1000 genomes]
rs1667347	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1667348	0.86[EUR][1000 genomes]
rs1667349	0.86[EUR][1000 genomes]
rs1667350	0.86[EUR][1000 genomes]
rs1667352	0.86[EUR][1000 genomes]
rs1667353	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs1667354	0.82[EUR][1000 genomes]
rs1667355	0.87[EUR][1000 genomes]
rs1667356	0.87[EUR][1000 genomes]
rs1667358	0.87[EUR][1000 genomes]
rs1667360	0.87[EUR][1000 genomes]
rs1667363	0.87[EUR][1000 genomes]
rs1667364	0.87[EUR][1000 genomes]
rs1667366	0.87[EUR][1000 genomes]
rs1667367	0.86[EUR][1000 genomes]
rs1667368	0.83[EUR][1000 genomes]
rs1667370	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1667371	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1667372	0.88[EUR][1000 genomes]
rs1667377	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1667378	0.93[EUR][1000 genomes]
rs1667379	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1667380	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17206540	0.93[EUR][1000 genomes]
rs1818748	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1829603	0.93[EUR][1000 genomes]
rs2082009	0.93[EUR][1000 genomes]
rs2082010	0.93[EUR][1000 genomes]
rs2090805	0.83[EUR][1000 genomes]
rs2118208	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs2118209	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs2263166	0.93[EUR][1000 genomes]
rs2385373	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2385374	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs2385375	0.90[EUR][1000 genomes]
rs2432651	0.85[EUR][1000 genomes]
rs2547044	0.87[EUR][1000 genomes]
rs2547045	0.87[EUR][1000 genomes]
rs2547049	0.87[EUR][1000 genomes]
rs2547050	0.83[EUR][1000 genomes]
rs2547051	0.86[EUR][1000 genomes]
rs2547052	0.86[EUR][1000 genomes]
rs2551049	0.93[EUR][1000 genomes]
rs2551053	0.87[EUR][1000 genomes]
rs2551054	0.87[EUR][1000 genomes]
rs2551060	0.84[EUR][1000 genomes]
rs2562585	0.93[EUR][1000 genomes]
rs2562591	0.93[EUR][1000 genomes]
rs2562607	0.93[EUR][1000 genomes]
rs2595545	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs2595546	0.86[EUR][1000 genomes]
rs2595547	0.85[EUR][1000 genomes]
rs2595554	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2595555	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28528332	0.88[EUR][1000 genomes]
rs2891754	0.89[EUR][1000 genomes]
rs2891766	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35162188	0.90[EUR][1000 genomes]
rs35524127	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35579954	0.88[EUR][1000 genomes]
rs35998183	0.88[EUR][1000 genomes]
rs36096221	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3902013	0.92[EUR][1000 genomes]
rs3929570	0.92[EUR][1000 genomes]
rs4117556	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4239587	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs4254428	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs4414605	0.85[EUR][1000 genomes]
rs4805199	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4805201	0.96[CEU][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4805202	0.88[EUR][1000 genomes]
rs4805203	0.88[EUR][1000 genomes]
rs4805204	0.88[EUR][1000 genomes]
rs4805205	0.88[EUR][1000 genomes]
rs4806407	0.96[CEU][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4806408	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs4806409	0.89[EUR][1000 genomes]
rs4806411	0.88[EUR][1000 genomes]
rs4806412	0.88[EUR][1000 genomes]
rs5008750	0.86[EUR][1000 genomes]
rs5008751	0.86[EUR][1000 genomes]
rs55825113	0.85[EUR][1000 genomes]
rs56154134	0.93[EUR][1000 genomes]
rs6510580	0.93[EUR][1000 genomes]
rs6510585	0.93[EUR][1000 genomes]
rs6510588	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs6510591	0.96[CEU][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6510592	0.96[CEU][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6510593	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs703527	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs703531	0.93[EUR][1000 genomes]
rs7245453	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7245520	0.93[EUR][1000 genomes]
rs7245882	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs7246022	0.88[EUR][1000 genomes]
rs7246720	0.91[EUR][1000 genomes]
rs7246739	0.93[EUR][1000 genomes]
rs7248132	0.87[EUR][1000 genomes]
rs7248948	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7250507	0.89[EUR][1000 genomes]
rs7252167	0.81[EUR][1000 genomes]
rs7252940	0.96[CEU][hapmap]
rs7253220	0.84[EUR][1000 genomes]
rs7253730	0.81[EUR][1000 genomes]
rs7255576	0.88[EUR][1000 genomes]
rs7255724	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs7256380	0.93[EUR][1000 genomes]
rs7257320	0.89[EUR][1000 genomes]
rs7257633	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7258360	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs7258650	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7259332	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs7259915	0.87[EUR][1000 genomes]
rs7260488	0.93[EUR][1000 genomes]
rs7260599	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs8099987	0.96[CEU][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8105065	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs8105621	0.88[EUR][1000 genomes]
rs8108429	0.96[CEU][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8108509	0.93[EUR][1000 genomes]
rs8109501	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs8110158	0.93[EUR][1000 genomes]
rs8110796	0.96[CEU][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8111285	0.96[CEU][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8113822	0.93[EUR][1000 genomes]
rs826324	0.93[EUR][1000 genomes]
rs826326	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826327	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs826328	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826329	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs826330	0.87[EUR][1000 genomes]
rs826331	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs935706	0.87[EUR][1000 genomes]
rs935707	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv833818	chr19:37427808-37602800	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
13	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
14	nsv911653	chr19:37482151-37556673	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv911654	chr19:37487632-37758082	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs826325	ZNF585B	cis	Artery Tibial	GTEx
rs826325	AC012309.5	cis	Thyroid	GTEx
rs826325	ZNF420	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37488200-37498200	Weak transcription	Fetal Heart	heart
2	chr19:37488400-37498000	Weak transcription	Placenta	Placenta
3	chr19:37488600-37495200	Weak transcription	Right Ventricle	heart
4	chr19:37488600-37498200	Weak transcription	Brain Cingulate Gyrus	brain
5	chr19:37488600-37498200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr19:37488600-37498400	Weak transcription	Brain Germinal Matrix	brain
7	chr19:37488600-37498400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr19:37489000-37497800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr19:37489000-37498200	Weak transcription	Brain Angular Gyrus	brain
10	chr19:37489000-37498200	Weak transcription	Brain Substantia Nigra	brain
11	chr19:37489000-37498200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr19:37489200-37495000	Weak transcription	Fetal Brain Female	brain
13	chr19:37493800-37498400	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links