The 2.0 version of rSNPBase

Variant report

Variant rs1375477
Chromosome Location chr19:37465414-37465415
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:89 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:37463600-37465600 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell
2 chr19:37464800-37468600 Weak transcription Muscle Satellite Cultured Cells --
3 chr19:37464800-37468600 Weak transcription Aorta Aorta
4 chr19:37464800-37469200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
5 chr19:37464800-37470400 Weak transcription HSMM muscle
6 chr19:37464800-37470600 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr19:37464800-37473600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
8 chr19:37464800-37482000 Weak transcription HSMMtube muscle
9 chr19:37465000-37465600 Enhancers Fetal Brain Male brain
10 chr19:37465000-37465600 Enhancers Fetal Kidney kidney
11 chr19:37465000-37465600 Enhancers Fetal Lung lung
12 chr19:37465000-37465800 ZNF genes & repeats iPS-18 Cell Line embryonic stem cell
13 chr19:37465000-37465800 Enhancers Breast Myoepithelial Primary Cells Breast
14 chr19:37465000-37466800 Weak transcription Fetal Intestine Large intestine
15 chr19:37465000-37467000 Weak transcription Duodenum Smooth Muscle Duodenum
16 chr19:37465000-37468400 Weak transcription Primary T cells from cord blood blood
17 chr19:37465000-37468400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
18 chr19:37465000-37468600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
19 chr19:37465000-37468600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
20 chr19:37465000-37468600 Weak transcription Fetal Intestine Small intestine
21 chr19:37465000-37468600 Weak transcription Ovary ovary
22 chr19:37465000-37468800 Weak transcription Gastric stomach
23 chr19:37465000-37468800 Weak transcription Stomach Smooth Muscle stomach
24 chr19:37465000-37469000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr19:37465000-37469200 Weak transcription Primary B cells from cord blood blood
26 chr19:37465000-37469200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
27 chr19:37465000-37469200 Weak transcription Brain Cingulate Gyrus brain
28 chr19:37465000-37469600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr19:37465000-37470200 Weak transcription Psoas Muscle Psoas
30 chr19:37465000-37470200 Weak transcription Osteobl bone
31 chr19:37465000-37471600 Weak transcription Brain Substantia Nigra brain
32 chr19:37465000-37471600 Weak transcription Rectal Mucosa Donor 31 rectum
33 chr19:37465000-37471600 Weak transcription Thymus Thymus
34 chr19:37465000-37473600 Weak transcription Small Intestine intestine
35 chr19:37465000-37487200 Weak transcription Placenta Placenta
36 chr19:37465200-37465600 Enhancers Primary T helper naive cells from peripheral blood blood
37 chr19:37465200-37465600 Enhancers Cortex derived primary cultured neurospheres brain
38 chr19:37465200-37465600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
39 chr19:37465200-37465600 Enhancers Brain Germinal Matrix brain
40 chr19:37465200-37465600 Enhancers Colonic Mucosa Colon
41 chr19:37465200-37465600 Enhancers Skeletal Muscle Female skeletal muscle
42 chr19:37465200-37467000 Weak transcription Primary B cells from peripheral blood blood
43 chr19:37465200-37467000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
44 chr19:37465200-37467000 Weak transcription Skeletal Muscle Male skeletal muscle
45 chr19:37465200-37468400 Weak transcription Primary T regulatory cells fromperipheralblood blood
46 chr19:37465200-37468400 Weak transcription Liver Liver
47 chr19:37465200-37468400 Weak transcription Lung lung
48 chr19:37465200-37468600 Weak transcription Primary T helper naive cells fromperipheralblood blood
49 chr19:37465200-37468600 Weak transcription Primary T helper cells PMA-I stimulated --
50 chr19:37465200-37468600 Weak transcription Brain Hippocampus Middle brain

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Last update: Aug 31, 2015