The 2.0 version of rSNPBase

Variant report

Variant rs1612652
Chromosome Location chr19:37477640-37477641
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:37464800-37482000 Weak transcription HSMMtube muscle
2 chr19:37465000-37487200 Weak transcription Placenta Placenta
3 chr19:37465200-37481800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
4 chr19:37465200-37482600 Weak transcription Right Ventricle heart
5 chr19:37465400-37483400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
6 chr19:37465400-37483600 Weak transcription Fetal Heart heart
7 chr19:37465600-37482400 Weak transcription Fetal Kidney kidney
8 chr19:37468800-37487800 Weak transcription Muscle Satellite Cultured Cells --
9 chr19:37469400-37479200 Weak transcription Rectal Smooth Muscle rectum
10 chr19:37470600-37482200 Weak transcription Psoas Muscle Psoas
11 chr19:37471800-37478000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr19:37471800-37480400 Weak transcription Gastric stomach
13 chr19:37471800-37480600 Weak transcription Primary T killer memory cells from peripheral blood blood
14 chr19:37471800-37482000 Weak transcription Left Ventricle heart
15 chr19:37471800-37482600 Weak transcription Brain Substantia Nigra brain
16 chr19:37472000-37477800 Weak transcription Brain Hippocampus Middle brain
17 chr19:37472000-37479200 Weak transcription Pancreas Pancrea
18 chr19:37472000-37479400 Weak transcription Brain Inferior Temporal Lobe brain
19 chr19:37472000-37481600 Weak transcription Brain Anterior Caudate brain
20 chr19:37472000-37483600 Weak transcription Osteobl bone
21 chr19:37472200-37479200 Weak transcription Fetal Lung lung
22 chr19:37472200-37479400 Weak transcription Fetal Intestine Large intestine
23 chr19:37472200-37479800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
24 chr19:37472200-37481800 Weak transcription Colon Smooth Muscle Colon
25 chr19:37472200-37485800 Weak transcription Brain Cingulate Gyrus brain
26 chr19:37472200-37487000 Weak transcription Placenta Amnion Placenta Amnion
27 chr19:37472200-37487400 Weak transcription Brain Angular Gyrus brain
28 chr19:37472400-37478000 Weak transcription Rectal Mucosa Donor 29 rectum
29 chr19:37472400-37481800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr19:37472400-37482400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr19:37472400-37482400 Weak transcription Dnd41 blood
32 chr19:37472800-37479200 Weak transcription Fetal Muscle Trunk muscle
33 chr19:37473000-37482000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr19:37473200-37478200 Weak transcription Primary T cells fromperipheralblood blood
35 chr19:37473200-37481800 Weak transcription Skeletal Muscle Female skeletal muscle
36 chr19:37474000-37479000 Weak transcription Cortex derived primary cultured neurospheres brain
37 chr19:37474400-37479200 Weak transcription Breast Myoepithelial Primary Cells Breast
38 chr19:37476400-37478000 Strong transcription Skeletal Muscle Male skeletal muscle
39 chr19:37476600-37478200 ZNF genes & repeats Primary T helper cells PMA-I stimulated --
40 chr19:37476600-37483400 Strong transcription Fetal Stomach stomach
41 chr19:37476800-37478400 ZNF genes & repeats Liver Liver
42 chr19:37476800-37478800 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
43 chr19:37476800-37489400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr19:37477000-37478800 Enhancers Fetal Muscle Leg muscle
45 chr19:37477000-37480000 ZNF genes & repeats Primary hematopoietic stem cells blood
46 chr19:37477000-37480000 ZNF genes & repeats Primary T cells effector/memory enriched fromperipheralblood blood
47 chr19:37477200-37479400 Weak transcription Primary T helper naive cells from peripheral blood blood
48 chr19:37477400-37479200 Strong transcription Duodenum Smooth Muscle Duodenum
49 chr19:37477400-37480200 ZNF genes & repeats Primary T helper naive cells fromperipheralblood blood
50 chr19:37477600-37477800 Enhancers Fetal Adrenal Gland Adrenal Gland

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Last update: Aug 31, 2015