Variant report

Variant	rs1375476
Chromosome Location	chr19:37465175-37465176
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37463031..37465781-chr19:37707432..37709239,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000245680	Chromatin interaction
ENSG00000188283	Chromatin interaction

Extended variants
information (count: 212 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:195)

rs_ID	r²[population]
rs1016216	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10406110	0.83[CEU][hapmap]
rs10413322	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10421398	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10421415	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10853950	0.81[CEU][hapmap]
rs11084874	0.81[CEU][hapmap]
rs11879644	0.81[CEU][hapmap]
rs12980849	0.81[CEU][hapmap]
rs12984458	0.81[CEU][hapmap];0.89[TSI][hapmap]
rs1345748	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1363751	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1363752	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1363753	0.91[EUR][1000 genomes]
rs1375477	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1402468	0.81[CEU][hapmap];0.91[TSI][hapmap]
rs1449200	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1449201	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1579314	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1612652	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1621329	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1623796	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1624087	1.00[CEU][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1625963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1626675	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1643418	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1644634	0.81[ASW][hapmap];0.92[CEU][hapmap];0.85[CHB][hapmap];0.88[MEX][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1644637	1.00[CEU][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1644647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1644648	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1644649	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1644650	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1644651	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1644652	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1644654	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1644656	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1644657	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1644658	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1644659	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1644661	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1644662	0.93[EUR][1000 genomes]
rs1644663	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1644665	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1644666	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1644667	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1644668	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1644669	0.92[EUR][1000 genomes]
rs1644670	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1644671	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1644672	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1644673	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1644674	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1644675	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1644676	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1644677	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1644678	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1644679	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1644682	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1644683	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1644684	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1644685	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1644686	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1644687	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1644688	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1644689	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1644690	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1644691	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1644693	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1644695	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1644698	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1644699	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1644700	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1667330	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1667333	1.00[CEU][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1667335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1667336	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1667337	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1667338	0.92[ASN][1000 genomes]
rs1667341	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1667342	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1667344	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1667346	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1667347	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1667348	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1667349	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1667350	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1667351	1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs1667352	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1667353	0.96[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1667354	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1667355	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1667356	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1667358	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1667360	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1667363	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1667364	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1667366	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1667367	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1667368	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1667370	0.88[EUR][1000 genomes]
rs1667371	0.88[EUR][1000 genomes]
rs1667372	0.83[EUR][1000 genomes]
rs1667377	0.85[EUR][1000 genomes]
rs1667378	0.81[EUR][1000 genomes]
rs1667379	0.85[EUR][1000 genomes]
rs1667380	0.83[EUR][1000 genomes]
rs1667382	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1667383	0.81[EUR][1000 genomes]
rs2118208	0.81[CEU][hapmap]
rs2118209	0.81[CEU][hapmap]
rs2385374	0.81[CEU][hapmap];0.89[TSI][hapmap]
rs2432651	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2547044	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2547045	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2547049	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2547050	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2547051	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2547052	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2547054	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2551053	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2551054	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2551057	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2551060	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2551062	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2595545	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.87[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2595546	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2595547	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2595554	0.80[EUR][1000 genomes]
rs2595555	0.85[EUR][1000 genomes]
rs3816391	0.80[JPT][hapmap]
rs4239587	0.89[TSI][hapmap]
rs4254428	0.81[CEU][hapmap];0.89[TSI][hapmap]
rs4805201	0.81[CEU][hapmap]
rs4806387	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4806407	0.81[CEU][hapmap];0.89[TSI][hapmap]
rs4806408	0.81[CEU][hapmap]
rs496730	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs497130	0.85[ASN][1000 genomes]
rs500126	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs5008750	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5008751	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs520288	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs523979	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs524933	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs533863	0.85[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs538534	0.85[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs538649	0.81[ASW][hapmap];0.85[CEU][hapmap];0.94[JPT][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs540472	0.81[EUR][1000 genomes]
rs541966	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs542729	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs543212	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs543518	0.83[CHB][hapmap];0.83[CHD][hapmap];0.87[JPT][hapmap]
rs543609	0.86[EUR][1000 genomes]
rs544964	0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs546589	0.92[CEU][hapmap];0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs548077	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs560480	0.81[EUR][1000 genomes]
rs560541	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs571294	0.92[CEU][hapmap]
rs578977	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs580846	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6510588	0.81[CEU][hapmap];0.86[TSI][hapmap]
rs6510591	0.81[CEU][hapmap];0.89[TSI][hapmap]
rs6510592	0.85[CEU][hapmap]
rs6510593	0.81[CEU][hapmap]
rs7245882	0.81[CEU][hapmap];0.89[TSI][hapmap]
rs7252167	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7252940	0.81[CEU][hapmap]
rs7253220	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7255724	0.84[CEU][hapmap]
rs7258360	0.81[CEU][hapmap];0.89[TSI][hapmap]
rs7259332	0.84[CEU][hapmap]
rs7259605	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7260599	0.81[CEU][hapmap];0.89[TSI][hapmap]
rs8099987	0.88[CEU][hapmap]
rs8105065	0.81[CEU][hapmap]
rs8108429	0.81[CEU][hapmap]
rs8109501	0.81[CEU][hapmap];0.89[TSI][hapmap]
rs8110796	0.81[CEU][hapmap]
rs8111285	0.88[CEU][hapmap]
rs826263	0.85[CEU][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes]
rs826285	0.85[CEU][hapmap]
rs826295	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs826298	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs826305	0.81[ASW][hapmap];0.88[CEU][hapmap];0.85[CHB][hapmap];0.88[MEX][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs826306	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs826320	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs826325	0.83[EUR][1000 genomes]
rs826327	0.85[CEU][hapmap]
rs826328	0.83[EUR][1000 genomes]
rs826329	0.81[EUR][1000 genomes]
rs826331	0.82[EUR][1000 genomes]
rs860392	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs935706	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs935707	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv521605	chr19:37261810-37483444	ZNF genes & repeats Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
11	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
13	nsv523848	chr19:37357289-37487632	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
14	nsv833818	chr19:37427808-37602800	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
15	nsv579463	chr19:37437106-37488055	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
16	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
17	esv1828064	chr19:37463270-37467305	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs1375476	ZNF420	cis	lymphoblastoid	seeQTL
rs1375476	AC012309.5	cis	Thyroid	GTEx
rs1375476	ZNF420	cis	multi-tissue	Pritchard
rs1375476	CAPN12	cis	cerebellum	SCAN
rs1375476	ZNF607	cis	parietal	SCAN
rs1375476	ZNF585B	cis	Artery Tibial	GTEx
rs1375476	PSMC4	cis	parietal	SCAN

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37463200-37465200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
2	chr19:37463200-37465200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
3	chr19:37463400-37465200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr19:37463400-37465200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
5	chr19:37463400-37465200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr19:37463400-37465200	Active TSS	Primary hematopoietic stem cells short term culture	blood
7	chr19:37463400-37465200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
8	chr19:37463400-37465200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr19:37463400-37465200	ZNF genes & repeats	Lung	lung
10	chr19:37463400-37465400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
11	chr19:37463400-37465400	Flanking Active TSS	Fetal Muscle Trunk	muscle
12	chr19:37463600-37465200	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr19:37463600-37465200	Active TSS	NH-A	brain
14	chr19:37463600-37465400	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr19:37463600-37465600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
16	chr19:37463800-37465200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr19:37464000-37465200	ZNF genes & repeats	A549	lung
18	chr19:37464200-37465200	Flanking Active TSS	Colonic Mucosa	Colon
19	chr19:37464200-37465200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr19:37464400-37465200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr19:37464400-37465200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr19:37464400-37465200	Flanking Active TSS	Liver	Liver
23	chr19:37464400-37465200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
24	chr19:37464400-37465400	Flanking Active TSS	Dnd41	blood
25	chr19:37464600-37465200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
26	chr19:37464600-37465200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr19:37464600-37465200	Flanking Active TSS	Adipose Nuclei	Adipose
28	chr19:37464600-37465200	Flanking Active TSS	Brain Angular Gyrus	brain
29	chr19:37464600-37465200	Flanking Active TSS	Colon Smooth Muscle	Colon
30	chr19:37464600-37465200	Flanking Active TSS	Duodenum Mucosa	Duodenum
31	chr19:37464600-37465200	Flanking Active TSS	Fetal Brain Female	brain
32	chr19:37464600-37465200	Flanking Active TSS	Fetal Muscle Leg	muscle
33	chr19:37464600-37465200	Flanking Active TSS	Fetal Stomach	stomach
34	chr19:37464600-37465200	Flanking Active TSS	Placenta Amnion	Placenta Amnion
35	chr19:37464600-37465200	Flanking Active TSS	Rectal Smooth Muscle	rectum
36	chr19:37464800-37465200	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr19:37464800-37465200	Enhancers	Primary B cells from peripheral blood	blood
38	chr19:37464800-37465200	Enhancers	Primary T cells fromperipheralblood	blood
39	chr19:37464800-37465200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr19:37464800-37465200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr19:37464800-37465200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr19:37464800-37465200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr19:37464800-37465200	Flanking Active TSS	Brain Germinal Matrix	brain
44	chr19:37464800-37465200	Enhancers	Left Ventricle	heart
45	chr19:37464800-37465200	Enhancers	Right Ventricle	heart
46	chr19:37464800-37465200	Enhancers	Sigmoid Colon	Sigmoid Colon
47	chr19:37464800-37465400	Transcr. at gene 5' and 3'	Brain Inferior Temporal Lobe	brain
48	chr19:37464800-37465400	Enhancers	Spleen	Spleen
49	chr19:37464800-37468600	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr19:37464800-37468600	Weak transcription	Aorta	Aorta

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