Variant report

Variant	rs1624087
Chromosome Location	chr19:37464375-37464376
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr19:37464254-37464501	H1-hESC	embryonic stem cell:	n/a	n/a
2	CTCF	chr19:37464240-37464535	GM19239	blood:	n/a	n/a
3	CTCF	chr19:37464303-37464470	GM13976	blood:	n/a	n/a
4	CTCF	chr19:37464240-37464390	BE2_C	brain:	n/a	n/a
5	CTCF	chr19:37464127-37464551	Spleen_OC	spleen:	n/a	n/a
6	CTCF	chr19:37464143-37464552	GM19238	blood:	n/a	n/a
7	POLR2A	chr19:37463700-37464602	PANC-1	pancreas:	n/a	n/a
8	MAX	chr19:37464183-37464663	H1-hESC	embryonic stem cell:	n/a	n/a
9	SMC3	chr19:37464203-37464536	GM12878	blood:	n/a	n/a
10	CTCF	chr19:37464280-37464430	HUVEC	blood vessel:	n/a	n/a
11	MXI1	chr19:37463807-37464715	IMR90	lung:	n/a	n/a
12	CTCF	chr19:37464083-37464601	T-47D	breast:	n/a	n/a
13	CTCF	chr19:37464260-37464410	GM12866	blood:	n/a	n/a
14	MYC	chr19:37464182-37464467	MCF-7	breast:	n/a	n/a
15	RAD21	chr19:37463702-37465035	SK-N-SH	brain:	n/a	chr19:37464972-37464982 chr19:37464403-37464415 chr19:37464202-37464214 chr19:37464398-37464417 chr19:37464053-37464063 chr19:37464403-37464413 chr19:37464013-37464026
16	CTCF	chr19:37464240-37464390	MCF-7	breast:	n/a	n/a
17	CTCF	chr19:37464360-37464510	HCM	heart:	n/a	n/a
18	CTCF	chr19:37464178-37464507	MCF-7	breast:	n/a	n/a
19	JUN	chr19:37464170-37464456	H1-hESC	embryonic stem cell:	n/a	n/a
20	CTCF	chr19:37464280-37464430	HMEC	breast:	n/a	n/a
21	CTCF	chr19:37464198-37464566	Fibrobl	skin:	n/a	n/a
22	POLR2A	chr19:37464156-37464494	H1-hESC	embryonic stem cell:	n/a	n/a
23	ZNF143	chr19:37463842-37464571	H1-hESC	embryonic stem cell:	n/a	chr19:37464045-37464054 chr19:37464043-37464052 chr19:37463958-37463977 chr19:37464047-37464066 chr19:37464043-37464061
24	MAX	chr19:37463887-37464649	MCF-7	breast:	n/a	n/a
25	CTCF	chr19:37464142-37464521	Lung_OC	lung:	n/a	n/a
26	CTCF	chr19:37464240-37464390	RPTEC	kidney:	n/a	n/a
27	TCF12	chr19:37464196-37464403	H1-hESC	embryonic stem cell:	n/a	n/a
28	CTCF	chr19:37464360-37464510	RPTEC	kidney:	n/a	n/a
29	CTCF	chr19:37464235-37464477	K562	blood:	n/a	n/a
30	CTCF	chr19:37464183-37464490	K562	blood:	n/a	n/a
31	CTCF	chr19:37464320-37464470	HPAF	blood vessel:	n/a	n/a
32	CTCF	chr19:37464193-37464487	GM12892	blood:	n/a	n/a
33	GABPA	chr19:37463645-37464599	MCF-7	breast:	n/a	n/a
34	BHLHE40	chr19:37464284-37464443	GM12878	blood:	n/a	n/a
35	CTCF	chr19:37464320-37464470	HMF	breast:	n/a	n/a
36	ZNF143	chr19:37463863-37464495	GM12878	blood:	n/a	chr19:37464045-37464054 chr19:37464043-37464052 chr19:37463958-37463977 chr19:37464047-37464066 chr19:37464043-37464061
37	CTCF	chr19:37464300-37464450	HVMF	connective:	n/a	n/a
38	CTCF	chr19:37464360-37464510	GM06990	blood:	n/a	n/a
39	CTCF	chr19:37464260-37464410	MCF-7	breast:	n/a	n/a
40	CTCF	chr19:37464300-37464450	WERI-Rb-1	eye:	n/a	n/a
41	CTCF	chr19:37464280-37464430	GM12870	blood:	n/a	n/a
42	CTCF	chr19:37464260-37464410	HUVEC	blood vessel:	n/a	n/a
43	CTCF	chr19:37464240-37464390	GM12865	blood:	n/a	n/a
44	CTCF	chr19:37464300-37464450	NHLF	lung:	n/a	n/a
45	CTCF	chr19:37464280-37464430	SK-N-SH_RA	brain:	n/a	n/a
46	CTCF	chr19:37464093-37464514	T-47D	breast:	n/a	n/a
47	CTCF	chr19:37464300-37464450	AG04450	lung:	n/a	n/a
48	CTCF	chr19:37464235-37464478	GM20000	blood:	n/a	n/a
49	CTCF	chr19:37464240-37464390	GM12872	blood:	n/a	n/a
50	SIN3AK20	chr19:37464159-37464529	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37463031..37465781-chr19:37707432..37709239,2	MCF-7	breast:

Variant related genes	Relation type
ZNF568	TF binding region
ENSG00000245680	Chromatin interaction
ENSG00000188283	Chromatin interaction

Extended variants
information (count: 239 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:221)

rs_ID	r²[population]
rs1016216	0.93[EUR][1000 genomes]
rs10406110	0.83[CEU][hapmap]
rs10413322	0.86[EUR][1000 genomes]
rs10414520	0.83[EUR][1000 genomes]
rs10416428	0.83[JPT][hapmap]
rs10421398	0.91[EUR][1000 genomes]
rs10421415	0.91[EUR][1000 genomes]
rs10421509	0.83[EUR][1000 genomes]
rs10853950	0.81[CEU][hapmap]
rs11084874	0.81[CEU][hapmap]
rs11879644	0.81[CEU][hapmap]
rs11881645	0.83[EUR][1000 genomes]
rs1227564	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12980849	0.81[CEU][hapmap]
rs12984458	0.81[CEU][hapmap];0.91[TSI][hapmap]
rs1345748	0.91[EUR][1000 genomes]
rs1363751	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1363752	0.91[EUR][1000 genomes]
rs1363753	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1375476	1.00[CEU][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1375477	0.95[EUR][1000 genomes]
rs1402468	0.81[CEU][hapmap];0.89[TSI][hapmap]
rs1449200	0.92[EUR][1000 genomes]
rs1449201	0.92[EUR][1000 genomes]
rs1579314	0.91[EUR][1000 genomes]
rs1612652	0.96[CEU][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]
rs1621329	0.92[EUR][1000 genomes]
rs1623796	1.00[CEU][hapmap];0.93[JPT][hapmap];0.92[EUR][1000 genomes]
rs1625963	1.00[CEU][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1626675	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1643418	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1644634	0.92[CEU][hapmap];0.91[LWK][hapmap];0.85[EUR][1000 genomes]
rs1644637	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1644647	1.00[CEU][hapmap];0.94[JPT][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1644648	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1644649	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1644650	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1644651	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1644652	0.95[EUR][1000 genomes]
rs1644654	0.94[EUR][1000 genomes]
rs1644656	0.94[EUR][1000 genomes]
rs1644657	0.93[EUR][1000 genomes]
rs1644658	0.93[EUR][1000 genomes]
rs1644659	0.90[EUR][1000 genomes]
rs1644661	0.93[EUR][1000 genomes]
rs1644662	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1644663	0.92[EUR][1000 genomes]
rs1644665	0.92[EUR][1000 genomes]
rs1644666	0.92[EUR][1000 genomes]
rs1644667	0.92[EUR][1000 genomes]
rs1644668	0.92[EUR][1000 genomes]
rs1644669	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1644670	0.92[EUR][1000 genomes]
rs1644671	0.91[EUR][1000 genomes]
rs1644672	0.96[CEU][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]
rs1644673	0.96[CEU][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes]
rs1644674	0.92[EUR][1000 genomes]
rs1644675	0.92[EUR][1000 genomes]
rs1644676	0.92[EUR][1000 genomes]
rs1644677	0.92[EUR][1000 genomes]
rs1644678	0.92[EUR][1000 genomes]
rs1644679	0.91[EUR][1000 genomes]
rs1644682	0.91[EUR][1000 genomes]
rs1644683	0.91[EUR][1000 genomes]
rs1644684	0.91[EUR][1000 genomes]
rs1644685	0.91[EUR][1000 genomes]
rs1644686	0.91[EUR][1000 genomes]
rs1644687	0.91[EUR][1000 genomes]
rs1644688	0.91[EUR][1000 genomes]
rs1644689	0.91[EUR][1000 genomes]
rs1644690	0.91[EUR][1000 genomes]
rs1644691	0.88[EUR][1000 genomes]
rs1644693	0.91[EUR][1000 genomes]
rs1644695	0.91[EUR][1000 genomes]
rs1644698	0.91[EUR][1000 genomes]
rs1644699	0.83[EUR][1000 genomes]
rs1644700	0.83[EUR][1000 genomes]
rs1667330	1.00[CEU][hapmap];0.94[JPT][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1667333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1667335	1.00[CEU][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1667336	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1667337	0.95[EUR][1000 genomes]
rs1667341	0.82[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs1667342	0.94[EUR][1000 genomes]
rs1667344	0.94[EUR][1000 genomes]
rs1667346	0.91[EUR][1000 genomes]
rs1667347	0.92[EUR][1000 genomes]
rs1667348	0.93[EUR][1000 genomes]
rs1667349	0.92[EUR][1000 genomes]
rs1667350	0.92[EUR][1000 genomes]
rs1667351	0.82[JPT][hapmap]
rs1667352	0.92[EUR][1000 genomes]
rs1667353	0.96[CEU][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]
rs1667354	0.96[EUR][1000 genomes]
rs1667355	0.91[EUR][1000 genomes]
rs1667356	0.91[EUR][1000 genomes]
rs1667358	0.91[EUR][1000 genomes]
rs1667360	0.91[EUR][1000 genomes]
rs1667363	0.91[EUR][1000 genomes]
rs1667364	0.91[EUR][1000 genomes]
rs1667366	0.91[EUR][1000 genomes]
rs1667367	0.90[EUR][1000 genomes]
rs1667368	0.88[EUR][1000 genomes]
rs1667370	0.84[EUR][1000 genomes]
rs1667371	0.84[EUR][1000 genomes]
rs1667372	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1667377	0.81[EUR][1000 genomes]
rs1667378	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1667379	0.81[EUR][1000 genomes]
rs1667382	0.85[EUR][1000 genomes]
rs1667383	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17206540	0.83[EUR][1000 genomes]
rs1818748	0.83[EUR][1000 genomes]
rs1829603	0.83[EUR][1000 genomes]
rs2082009	0.83[EUR][1000 genomes]
rs2082010	0.83[EUR][1000 genomes]
rs2118208	0.81[CEU][hapmap]
rs2118209	0.81[CEU][hapmap]
rs2263166	0.83[EUR][1000 genomes]
rs2385374	0.81[CEU][hapmap];0.91[TSI][hapmap]
rs2432651	0.89[EUR][1000 genomes]
rs2547044	0.91[EUR][1000 genomes]
rs2547045	0.91[EUR][1000 genomes]
rs2547049	0.91[EUR][1000 genomes]
rs2547050	0.90[EUR][1000 genomes]
rs2547051	0.92[EUR][1000 genomes]
rs2547052	0.92[EUR][1000 genomes]
rs2547054	0.83[AFR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2551049	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2551053	0.91[EUR][1000 genomes]
rs2551054	0.91[EUR][1000 genomes]
rs2551057	0.82[EUR][1000 genomes]
rs2551060	0.90[EUR][1000 genomes]
rs2551062	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2562585	0.83[EUR][1000 genomes]
rs2562591	0.83[EUR][1000 genomes]
rs2562607	0.83[EUR][1000 genomes]
rs2595545	0.96[CEU][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]
rs2595546	0.92[EUR][1000 genomes]
rs2595547	0.92[EUR][1000 genomes]
rs2595555	0.81[EUR][1000 genomes]
rs2891766	0.82[EUR][1000 genomes]
rs35524127	0.83[EUR][1000 genomes]
rs36096221	0.83[EUR][1000 genomes]
rs3902013	0.82[EUR][1000 genomes]
rs3929570	0.82[EUR][1000 genomes]
rs4239587	0.91[TSI][hapmap]
rs4254428	0.81[CEU][hapmap];0.91[TSI][hapmap]
rs4805201	0.81[CEU][hapmap]
rs4806387	0.81[EUR][1000 genomes]
rs4806407	0.81[CEU][hapmap];0.91[TSI][hapmap]
rs4806408	0.81[CEU][hapmap]
rs496730	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs500126	0.85[EUR][1000 genomes]
rs5008750	0.92[EUR][1000 genomes]
rs5008751	0.92[EUR][1000 genomes]
rs520288	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs523979	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs524933	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs533863	0.85[CEU][hapmap];0.94[JPT][hapmap];0.92[EUR][1000 genomes]
rs538534	0.85[CEU][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs538649	0.85[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.91[MEX][hapmap];0.92[MKK][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs540472	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs541966	0.99[EUR][1000 genomes]
rs542729	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs543212	0.86[EUR][1000 genomes]
rs543518	0.82[JPT][hapmap]
rs543609	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs544964	0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs546589	0.92[CEU][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs548077	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs560480	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs560541	0.85[EUR][1000 genomes]
rs56154134	0.83[EUR][1000 genomes]
rs571294	0.92[ASW][hapmap];0.92[CEU][hapmap];0.86[CHB][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];0.86[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs578977	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs580846	0.91[EUR][1000 genomes]
rs6510580	0.83[EUR][1000 genomes]
rs6510585	0.83[EUR][1000 genomes]
rs6510588	0.81[CEU][hapmap];0.80[MKK][hapmap];0.89[TSI][hapmap]
rs6510591	0.81[CEU][hapmap];0.91[TSI][hapmap]
rs6510592	0.85[CEU][hapmap]
rs6510593	0.81[CEU][hapmap]
rs703531	0.83[EUR][1000 genomes]
rs7245453	0.83[EUR][1000 genomes]
rs7245520	0.83[EUR][1000 genomes]
rs7245882	0.81[CEU][hapmap];0.83[MKK][hapmap];0.91[TSI][hapmap]
rs7246720	0.81[EUR][1000 genomes]
rs7246739	0.83[EUR][1000 genomes]
rs7248948	0.83[EUR][1000 genomes]
rs7252167	0.85[EUR][1000 genomes]
rs7252940	0.81[CEU][hapmap]
rs7253220	0.88[EUR][1000 genomes]
rs7255724	0.84[CEU][hapmap]
rs7256380	0.83[EUR][1000 genomes]
rs7258360	0.81[CEU][hapmap];0.91[TSI][hapmap]
rs7259332	0.84[CEU][hapmap]
rs7259605	0.99[EUR][1000 genomes]
rs7260488	0.83[EUR][1000 genomes]
rs7260599	0.81[CEU][hapmap];0.83[MKK][hapmap];0.91[TSI][hapmap]
rs8099987	0.88[CEU][hapmap]
rs8105065	0.81[CEU][hapmap]
rs8108429	0.81[CEU][hapmap]
rs8108509	0.83[EUR][1000 genomes]
rs8109501	0.81[CEU][hapmap];0.91[TSI][hapmap]
rs8110158	0.83[EUR][1000 genomes]
rs8110796	0.81[CEU][hapmap]
rs8111285	0.88[CEU][hapmap]
rs8113822	0.83[EUR][1000 genomes]
rs826263	0.85[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs826285	0.85[CEU][hapmap]
rs826295	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs826298	0.80[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs826305	0.88[CEU][hapmap];0.92[LWK][hapmap];0.85[EUR][1000 genomes]
rs826306	0.85[EUR][1000 genomes]
rs826320	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs826324	0.83[EUR][1000 genomes]
rs826327	0.85[CEU][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs860392	0.86[EUR][1000 genomes]
rs935706	0.91[EUR][1000 genomes]
rs935707	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv521605	chr19:37261810-37483444	ZNF genes & repeats Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
11	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
13	nsv523848	chr19:37357289-37487632	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
14	nsv833818	chr19:37427808-37602800	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
15	nsv579463	chr19:37437106-37488055	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
16	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
17	esv1828064	chr19:37463270-37467305	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
18	esv1808096	chr19:37463582-37464848	Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs1624087	RYR1	cis	cerebellum	SCAN
rs1624087	CAPN12	cis	cerebellum	SCAN
rs1624087	PSMC4	cis	parietal	SCAN
rs1624087	ZNF607	cis	parietal	SCAN
rs1624087	AC012309.5	cis	Thyroid	GTEx
rs1624087	ZNF585B	cis	Artery Tibial	GTEx
rs1624087	ZNF420	cis	lymphoblastoid	seeQTL

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37463200-37464600	Active TSS	Brain Angular Gyrus	brain
2	chr19:37463200-37464600	Active TSS	Brain Anterior Caudate	brain
3	chr19:37463200-37464600	Active TSS	Brain Cingulate Gyrus	brain
4	chr19:37463200-37464600	Active TSS	Placenta Amnion	Placenta Amnion
5	chr19:37463200-37464600	Active TSS	NHEK	skin
6	chr19:37463200-37464800	Active TSS	Fetal Intestine Small	intestine
7	chr19:37463200-37465000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr19:37463200-37465000	Flanking Active TSS	Stomach Smooth Muscle	stomach
9	chr19:37463200-37465200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
10	chr19:37463200-37465200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
11	chr19:37463400-37464400	Active TSS	Brain Hippocampus Middle	brain
12	chr19:37463400-37464400	ZNF genes & repeats	Fetal Thymus	thymus
13	chr19:37463400-37464400	Active TSS	Rectal Mucosa Donor 31	rectum
14	chr19:37463400-37464600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
15	chr19:37463400-37464600	Active TSS	Primary T cells from cord blood	blood
16	chr19:37463400-37464600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr19:37463400-37464600	Active TSS	Psoas Muscle	Psoas
18	chr19:37463400-37464600	Active TSS	Rectal Smooth Muscle	rectum
19	chr19:37463400-37464600	Active TSS	Right Atrium	heart
20	chr19:37463400-37464800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr19:37463400-37464800	Active TSS	HSMMtube	muscle
22	chr19:37463400-37465000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr19:37463400-37465000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr19:37463400-37465000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
25	chr19:37463400-37465000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr19:37463400-37465000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr19:37463400-37465000	Active TSS	Fetal Intestine Large	intestine
28	chr19:37463400-37465000	Active TSS	Osteobl	bone
29	chr19:37463400-37465200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr19:37463400-37465200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
31	chr19:37463400-37465200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr19:37463400-37465200	Active TSS	Primary hematopoietic stem cells short term culture	blood
33	chr19:37463400-37465200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
34	chr19:37463400-37465200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr19:37463400-37465200	ZNF genes & repeats	Lung	lung
36	chr19:37463400-37465400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
37	chr19:37463400-37465400	Flanking Active TSS	Fetal Muscle Trunk	muscle
38	chr19:37463600-37464600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr19:37463600-37464600	Active TSS	Muscle Satellite Cultured Cells	--
40	chr19:37463600-37464600	Active TSS	Brain Substantia Nigra	brain
41	chr19:37463600-37464600	Active TSS	Esophagus	oesophagus
42	chr19:37463600-37464600	Active TSS	Fetal Lung	lung
43	chr19:37463600-37464600	Active TSS	Ovary	ovary
44	chr19:37463600-37464600	Active TSS	Rectal Mucosa Donor 29	rectum
45	chr19:37463600-37464800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr19:37463600-37464800	Flanking Active TSS	Primary B cells from cord blood	blood
47	chr19:37463600-37464800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
48	chr19:37463600-37464800	Active TSS	Aorta	Aorta
49	chr19:37463600-37465000	Active TSS	HUES64 Cell Line	embryonic stem cell
50	chr19:37463600-37465000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung

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