Variant report

Variant	rs1095490
Chromosome Location	chr19:37498066-37498067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 193 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:177)

rs_ID	r²[population]
rs10402907	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10403718	0.82[EUR][1000 genomes]
rs10403728	0.84[EUR][1000 genomes]
rs10403975	0.87[EUR][1000 genomes]
rs10406110	0.82[EUR][1000 genomes]
rs10408085	0.81[EUR][1000 genomes]
rs10408359	0.82[EUR][1000 genomes]
rs10413322	0.81[EUR][1000 genomes]
rs10413360	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10413385	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10414520	0.88[EUR][1000 genomes]
rs10419643	0.83[EUR][1000 genomes]
rs10420330	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10421398	0.81[EUR][1000 genomes]
rs10421415	0.81[EUR][1000 genomes]
rs10421509	0.88[EUR][1000 genomes]
rs10853950	0.84[EUR][1000 genomes]
rs11084874	0.84[EUR][1000 genomes]
rs11084875	0.81[EUR][1000 genomes]
rs11666786	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11672848	0.86[ASN][1000 genomes]
rs11879644	0.83[EUR][1000 genomes]
rs11879645	0.83[EUR][1000 genomes]
rs11881645	0.88[EUR][1000 genomes]
rs12980849	0.80[EUR][1000 genomes]
rs12984458	0.83[EUR][1000 genomes]
rs1345748	0.81[EUR][1000 genomes]
rs1363752	0.81[EUR][1000 genomes]
rs1402468	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1449200	0.80[EUR][1000 genomes]
rs1449201	0.80[EUR][1000 genomes]
rs1579314	0.81[EUR][1000 genomes]
rs1612652	0.80[EUR][1000 genomes]
rs1621329	0.80[EUR][1000 genomes]
rs1644663	0.80[EUR][1000 genomes]
rs1644665	0.80[EUR][1000 genomes]
rs1644666	0.80[EUR][1000 genomes]
rs1644667	0.80[EUR][1000 genomes]
rs1644668	0.80[EUR][1000 genomes]
rs1644670	0.80[EUR][1000 genomes]
rs1644674	0.80[EUR][1000 genomes]
rs1644675	0.80[EUR][1000 genomes]
rs1644676	0.80[EUR][1000 genomes]
rs1644677	0.80[EUR][1000 genomes]
rs1644678	0.80[EUR][1000 genomes]
rs1644679	0.80[EUR][1000 genomes]
rs1644682	0.81[EUR][1000 genomes]
rs1644683	0.81[EUR][1000 genomes]
rs1644684	0.81[EUR][1000 genomes]
rs1644685	0.81[EUR][1000 genomes]
rs1644686	0.81[EUR][1000 genomes]
rs1644687	0.81[EUR][1000 genomes]
rs1644688	0.81[EUR][1000 genomes]
rs1644689	0.81[EUR][1000 genomes]
rs1644690	0.81[EUR][1000 genomes]
rs1644693	0.81[EUR][1000 genomes]
rs1644695	0.81[EUR][1000 genomes]
rs1644698	0.81[EUR][1000 genomes]
rs1667347	0.80[EUR][1000 genomes]
rs1667349	0.80[EUR][1000 genomes]
rs1667350	0.80[EUR][1000 genomes]
rs1667353	0.80[EUR][1000 genomes]
rs1667355	0.81[EUR][1000 genomes]
rs1667356	0.81[EUR][1000 genomes]
rs1667358	0.81[EUR][1000 genomes]
rs1667360	0.81[EUR][1000 genomes]
rs1667363	0.81[EUR][1000 genomes]
rs1667364	0.81[EUR][1000 genomes]
rs1667366	0.81[EUR][1000 genomes]
rs1667370	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1667371	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1667372	0.84[EUR][1000 genomes]
rs1667377	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1667378	0.87[EUR][1000 genomes]
rs1667379	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1667380	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17206540	0.88[EUR][1000 genomes]
rs1818748	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1829603	0.88[EUR][1000 genomes]
rs2082009	0.88[EUR][1000 genomes]
rs2082010	0.88[EUR][1000 genomes]
rs2118208	0.83[EUR][1000 genomes]
rs2118209	0.83[EUR][1000 genomes]
rs2263166	0.88[EUR][1000 genomes]
rs2385373	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2385374	0.84[EUR][1000 genomes]
rs2385375	0.85[EUR][1000 genomes]
rs2432651	0.83[EUR][1000 genomes]
rs2547044	0.81[EUR][1000 genomes]
rs2547045	0.81[EUR][1000 genomes]
rs2547049	0.81[EUR][1000 genomes]
rs2551049	0.86[EUR][1000 genomes]
rs2551053	0.81[EUR][1000 genomes]
rs2551054	0.81[EUR][1000 genomes]
rs2562585	0.88[EUR][1000 genomes]
rs2562591	0.88[EUR][1000 genomes]
rs2562607	0.88[EUR][1000 genomes]
rs2595554	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2595555	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28528332	0.83[EUR][1000 genomes]
rs2891754	0.84[EUR][1000 genomes]
rs2891766	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35162188	0.85[EUR][1000 genomes]
rs35524127	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35579954	0.83[EUR][1000 genomes]
rs35998183	0.83[EUR][1000 genomes]
rs36096221	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3902013	0.88[EUR][1000 genomes]
rs3929570	0.87[EUR][1000 genomes]
rs4117556	0.89[ASN][1000 genomes]
rs4239587	0.83[EUR][1000 genomes]
rs4254428	0.83[EUR][1000 genomes]
rs4414605	0.82[EUR][1000 genomes]
rs4805199	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4805201	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4805202	0.83[EUR][1000 genomes]
rs4805203	0.83[EUR][1000 genomes]
rs4805204	0.83[EUR][1000 genomes]
rs4805205	0.83[EUR][1000 genomes]
rs4806407	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4806408	0.84[EUR][1000 genomes]
rs4806409	0.84[EUR][1000 genomes]
rs4806411	0.83[EUR][1000 genomes]
rs4806412	0.83[EUR][1000 genomes]
rs5008750	0.80[EUR][1000 genomes]
rs5008751	0.80[EUR][1000 genomes]
rs56154134	0.88[EUR][1000 genomes]
rs62108896	0.81[ASN][1000 genomes]
rs6510580	0.88[EUR][1000 genomes]
rs6510585	0.88[EUR][1000 genomes]
rs6510587	0.83[ASN][1000 genomes]
rs6510588	0.82[EUR][1000 genomes]
rs6510591	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6510592	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6510593	0.83[EUR][1000 genomes]
rs703527	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs703531	0.88[EUR][1000 genomes]
rs7245453	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7245520	0.88[EUR][1000 genomes]
rs7245882	0.84[EUR][1000 genomes]
rs7246022	0.83[EUR][1000 genomes]
rs7246720	0.86[EUR][1000 genomes]
rs7246739	0.88[EUR][1000 genomes]
rs7248132	0.82[EUR][1000 genomes]
rs7248948	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7250507	0.84[EUR][1000 genomes]
rs7255576	0.83[EUR][1000 genomes]
rs7255724	0.82[EUR][1000 genomes]
rs7256380	0.88[EUR][1000 genomes]
rs7257320	0.86[EUR][1000 genomes]
rs7257633	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7258360	0.83[EUR][1000 genomes]
rs7258650	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7259332	0.84[EUR][1000 genomes]
rs7259915	0.82[EUR][1000 genomes]
rs7260488	0.88[EUR][1000 genomes]
rs7260599	0.83[EUR][1000 genomes]
rs8099987	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8105065	0.83[EUR][1000 genomes]
rs8105621	0.83[EUR][1000 genomes]
rs8108429	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8108509	0.88[EUR][1000 genomes]
rs8109501	0.83[EUR][1000 genomes]
rs8110158	0.88[EUR][1000 genomes]
rs8110796	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8111285	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8113822	0.88[EUR][1000 genomes]
rs826324	0.88[EUR][1000 genomes]
rs826325	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs826326	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs826327	0.89[EUR][1000 genomes]
rs826328	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs826329	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs826330	0.84[EUR][1000 genomes]
rs826331	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs935706	0.81[EUR][1000 genomes]
rs935707	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv833818	chr19:37427808-37602800	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
13	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
14	nsv911653	chr19:37482151-37556673	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv911654	chr19:37487632-37758082	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
16	nsv961214	chr19:37494699-37506227	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1095490	AC012309.5	cis	Thyroid	GTEx
rs1095490	ZNF585B	cis	Artery Tibial	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37488200-37498200	Weak transcription	Fetal Heart	heart
2	chr19:37488600-37498200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr19:37488600-37498200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr19:37488600-37498400	Weak transcription	Brain Germinal Matrix	brain
5	chr19:37488600-37498400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr19:37489000-37498200	Weak transcription	Brain Angular Gyrus	brain
7	chr19:37489000-37498200	Weak transcription	Brain Substantia Nigra	brain
8	chr19:37489000-37498200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr19:37493800-37498400	Weak transcription	Fetal Muscle Leg	muscle
10	chr19:37498000-37498200	Enhancers	Placenta	Placenta
11	chr19:37498000-37498600	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr19:37498000-37508400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood

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