Variant report

Variant	rs6510587
Chromosome Location	chr19:37597194-37597195
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10402907	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10403718	0.86[EUR][1000 genomes]
rs10403728	0.86[EUR][1000 genomes]
rs10403975	0.84[EUR][1000 genomes]
rs10406110	0.84[EUR][1000 genomes]
rs10408085	0.85[EUR][1000 genomes]
rs10408359	0.86[EUR][1000 genomes]
rs10413360	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10413385	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10413934	0.84[ASN][1000 genomes]
rs10414520	0.82[EUR][1000 genomes]
rs10419643	0.87[EUR][1000 genomes]
rs10420330	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10421509	0.82[EUR][1000 genomes]
rs10853950	0.86[EUR][1000 genomes]
rs1095490	0.83[ASN][1000 genomes]
rs11084874	0.86[EUR][1000 genomes]
rs11084875	0.86[EUR][1000 genomes]
rs11666786	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11672848	0.82[ASN][1000 genomes]
rs11879644	0.87[EUR][1000 genomes]
rs11879645	0.87[EUR][1000 genomes]
rs11881645	0.82[EUR][1000 genomes]
rs12980849	0.80[EUR][1000 genomes]
rs12984458	0.87[EUR][1000 genomes]
rs1402468	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17206540	0.82[EUR][1000 genomes]
rs1818748	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1829603	0.82[EUR][1000 genomes]
rs2082009	0.82[EUR][1000 genomes]
rs2082010	0.82[EUR][1000 genomes]
rs2090805	0.82[EUR][1000 genomes]
rs2118208	0.87[EUR][1000 genomes]
rs2118209	0.87[EUR][1000 genomes]
rs2263166	0.82[EUR][1000 genomes]
rs2385373	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2385374	0.86[EUR][1000 genomes]
rs2385375	0.85[EUR][1000 genomes]
rs2562585	0.82[EUR][1000 genomes]
rs2562591	0.82[EUR][1000 genomes]
rs2562607	0.82[EUR][1000 genomes]
rs28528332	0.87[EUR][1000 genomes]
rs2891754	0.84[EUR][1000 genomes]
rs2891766	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35162188	0.85[EUR][1000 genomes]
rs35524127	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35579954	0.87[EUR][1000 genomes]
rs35998183	0.87[EUR][1000 genomes]
rs36096221	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3902013	0.81[EUR][1000 genomes]
rs3929570	0.82[EUR][1000 genomes]
rs4239587	0.87[EUR][1000 genomes]
rs4254428	0.85[EUR][1000 genomes]
rs4414605	0.84[EUR][1000 genomes]
rs4805199	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4805201	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4805202	0.87[EUR][1000 genomes]
rs4805203	0.87[EUR][1000 genomes]
rs4805204	0.87[EUR][1000 genomes]
rs4805205	0.87[EUR][1000 genomes]
rs4806407	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4806408	0.86[EUR][1000 genomes]
rs4806409	0.86[EUR][1000 genomes]
rs4806411	0.87[EUR][1000 genomes]
rs4806412	0.87[EUR][1000 genomes]
rs56154134	0.82[EUR][1000 genomes]
rs6510580	0.82[EUR][1000 genomes]
rs6510585	0.82[EUR][1000 genomes]
rs6510588	0.86[EUR][1000 genomes]
rs6510591	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6510592	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6510593	0.87[EUR][1000 genomes]
rs703531	0.81[EUR][1000 genomes]
rs7245453	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7245520	0.82[EUR][1000 genomes]
rs7245882	0.86[EUR][1000 genomes]
rs7246022	0.87[EUR][1000 genomes]
rs7246720	0.82[EUR][1000 genomes]
rs7246739	0.82[EUR][1000 genomes]
rs7248132	0.86[EUR][1000 genomes]
rs7248948	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7250507	0.86[EUR][1000 genomes]
rs7253730	0.80[EUR][1000 genomes]
rs7255576	0.87[EUR][1000 genomes]
rs7255724	0.84[EUR][1000 genomes]
rs7256380	0.82[EUR][1000 genomes]
rs7257320	0.84[EUR][1000 genomes]
rs7257633	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7258360	0.87[EUR][1000 genomes]
rs7258650	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7259332	0.86[EUR][1000 genomes]
rs7259915	0.86[EUR][1000 genomes]
rs7260488	0.82[EUR][1000 genomes]
rs7260599	0.87[EUR][1000 genomes]
rs8099987	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8105065	0.87[EUR][1000 genomes]
rs8105621	0.87[EUR][1000 genomes]
rs8108429	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8108509	0.82[EUR][1000 genomes]
rs8109501	0.87[EUR][1000 genomes]
rs8110158	0.82[EUR][1000 genomes]
rs8110796	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8111285	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8113822	0.82[EUR][1000 genomes]
rs826324	0.82[EUR][1000 genomes]
rs826331	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
12	nsv833818	chr19:37427808-37602800	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
13	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
14	nsv911654	chr19:37487632-37758082	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37592800-37597400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr19:37593000-37597400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr19:37593600-37597200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr19:37593600-37597200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr19:37593600-37597200	Weak transcription	Fetal Intestine Small	intestine
6	chr19:37593600-37597200	Weak transcription	Fetal Stomach	stomach
7	chr19:37593600-37597400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr19:37593600-37597400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr19:37593600-37597400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr19:37593600-37597400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr19:37593600-37597400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr19:37593600-37597400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr19:37593600-37597400	Weak transcription	Aorta	Aorta
14	chr19:37593600-37597400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr19:37593600-37597400	Weak transcription	Esophagus	oesophagus
16	chr19:37593600-37597400	Weak transcription	Placenta	Placenta
17	chr19:37593600-37597400	Weak transcription	Lung	lung
18	chr19:37593600-37597400	Weak transcription	Pancreas	Pancrea
19	chr19:37593800-37597200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr19:37593800-37597200	Weak transcription	Thymus	Thymus
21	chr19:37593800-37597400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr19:37593800-37597400	Weak transcription	Left Ventricle	heart
23	chr19:37594600-37597200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr19:37594600-37597200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr19:37594600-37597400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr19:37594600-37597400	Weak transcription	Right Ventricle	heart
27	chr19:37594600-37599200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr19:37594800-37597200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr19:37594800-37597200	Weak transcription	Primary T cells from cord blood	blood
30	chr19:37594800-37597200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr19:37594800-37597200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr19:37594800-37597200	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr19:37594800-37597200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr19:37594800-37597200	Weak transcription	Brain Anterior Caudate	brain
35	chr19:37594800-37597200	Weak transcription	Brain Germinal Matrix	brain
36	chr19:37594800-37597200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr19:37594800-37597200	Weak transcription	Duodenum Mucosa	Duodenum
38	chr19:37594800-37597200	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr19:37594800-37597200	Weak transcription	Fetal Kidney	kidney
40	chr19:37594800-37597200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr19:37594800-37597200	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr19:37594800-37597200	Weak transcription	Stomach Smooth Muscle	stomach
43	chr19:37594800-37597200	Weak transcription	GM12878-XiMat	blood
44	chr19:37594800-37597400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr19:37594800-37597400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr19:37594800-37597400	Weak transcription	Brain Substantia Nigra	brain
47	chr19:37594800-37597400	Weak transcription	Colonic Mucosa	Colon
48	chr19:37594800-37597400	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr19:37594800-37597400	Weak transcription	Rectal Smooth Muscle	rectum
50	chr19:37594800-37597800	Weak transcription	Fetal Heart	heart

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