Variant report

Variant	rs55825433
Chromosome Location	chr9:85980099-85980100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10125280	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12000173	0.86[EUR][1000 genomes]
rs3889596	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57018246	0.84[ASN][1000 genomes]
rs6559720	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7034503	0.93[ASN][1000 genomes]
rs72743085	0.93[ASN][1000 genomes]
rs73463650	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73463659	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73463663	0.83[ASN][1000 genomes]
rs73463664	0.85[ASN][1000 genomes]
rs73465724	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85937400-85998000	Weak transcription	Aorta	Aorta
2	chr9:85956200-85986600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr9:85958200-85980600	Weak transcription	Left Ventricle	heart
4	chr9:85958200-86007600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr9:85970800-85980800	Weak transcription	Ovary	ovary
6	chr9:85971000-85980800	Weak transcription	Adipose Nuclei	Adipose
7	chr9:85977000-85990200	Weak transcription	Right Ventricle	heart
8	chr9:85977400-85981600	Weak transcription	HepG2	liver
9	chr9:85977400-85982400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr9:85977400-85994600	Weak transcription	Pancreas	Pancrea
11	chr9:85977600-85990000	Weak transcription	Spleen	Spleen
12	chr9:85979400-85980400	Weak transcription	Fetal Brain Female	brain
13	chr9:85979800-85980200	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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