Variant report

Variant	rs73465724
Chromosome Location	chr9:86018687-86018688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:85998150..86000418-chr9:86018604..86020788,2	MCF-7	breast:
2	chr9:86011563..86014986-chr9:86016916..86020141,4	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10125280	0.86[EUR][1000 genomes]
rs10217271	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10217435	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10217669	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10217746	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10217752	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140068	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140071	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140080	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11140081	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11140085	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11998876	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12000173	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12005884	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12337733	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12339003	1.00[ASN][1000 genomes]
rs12340422	0.86[AMR][1000 genomes]
rs12346296	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12350642	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12551179	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12553050	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17086251	1.00[ASN][1000 genomes]
rs3889596	0.81[EUR][1000 genomes]
rs3893399	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55825433	0.86[EUR][1000 genomes]
rs61424289	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6559720	0.84[EUR][1000 genomes]
rs73463650	0.81[EUR][1000 genomes]
rs73463659	0.86[EUR][1000 genomes]
rs73465767	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86000000-86020600	Weak transcription	Fetal Brain Female	brain
2	chr9:86005400-86021000	Weak transcription	Right Atrium	heart
3	chr9:86013400-86041000	Weak transcription	Aorta	Aorta
4	chr9:86016600-86023600	Weak transcription	HepG2	liver
5	chr9:86017400-86034400	Weak transcription	Psoas Muscle	Psoas
6	chr9:86018000-86019600	Enhancers	HSMMtube	muscle
7	chr9:86018200-86019000	Enhancers	Left Ventricle	heart
8	chr9:86018200-86019200	Enhancers	Fetal Muscle Leg	muscle
9	chr9:86018200-86019400	Enhancers	Adipose Nuclei	Adipose
10	chr9:86018400-86018800	Enhancers	Fetal Kidney	kidney
11	chr9:86018400-86019000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:86018400-86019000	Enhancers	Stomach Smooth Muscle	stomach
13	chr9:86018400-86019400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr9:86018400-86019400	Enhancers	NH-A	brain
15	chr9:86018400-86019600	Enhancers	Duodenum Smooth Muscle	Duodenum
16	chr9:86018400-86019800	Enhancers	Fetal Heart	heart
17	chr9:86018600-86018800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr9:86018600-86019000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr9:86018600-86019000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr9:86018600-86019000	Enhancers	HSMM	muscle
21	chr9:86018600-86019400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr9:86018600-86019400	Enhancers	Fetal Stomach	stomach
23	chr9:86018600-86019400	Enhancers	Stomach Mucosa	stomach
24	chr9:86018600-86019400	Enhancers	NHDF-Ad	bronchial
25	chr9:86018600-86020800	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr9:86018600-86021200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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