Variant report

Variant	rs12340422
Chromosome Location	chr9:86013870-86013871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10217271	0.90[CEU][hapmap];0.92[CHB][hapmap]
rs10217435	0.90[CEU][hapmap];0.84[CHB][hapmap]
rs10217669	0.89[CEU][hapmap];0.92[CHB][hapmap]
rs10217746	0.89[CEU][hapmap];0.92[CHB][hapmap]
rs11140068	0.90[CEU][hapmap];0.92[CHB][hapmap]
rs11140071	0.90[CEU][hapmap]
rs11140081	0.89[CEU][hapmap];0.92[CHB][hapmap]
rs11140085	0.84[CHB][hapmap]
rs12000173	0.86[AMR][1000 genomes]
rs12005884	0.88[CEU][hapmap];0.84[CHB][hapmap]
rs12337733	0.90[CEU][hapmap];0.92[CHB][hapmap]
rs12339003	0.80[CEU][hapmap];0.92[CHB][hapmap]
rs12346296	0.90[CEU][hapmap];0.84[CHB][hapmap]
rs12350642	0.88[CEU][hapmap];0.84[CHB][hapmap]
rs12551179	0.90[CEU][hapmap];0.92[CHB][hapmap]
rs12553050	0.90[CEU][hapmap];0.88[CHB][hapmap]
rs17086251	0.92[CHB][hapmap]
rs3889596	0.92[CHB][hapmap]
rs3893399	0.89[CEU][hapmap];0.84[CHB][hapmap]
rs6559720	0.82[ASN][1000 genomes]
rs73465724	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86000000-86020600	Weak transcription	Fetal Brain Female	brain
2	chr9:86004600-86014200	Weak transcription	Gastric	stomach
3	chr9:86005400-86021000	Weak transcription	Right Atrium	heart
4	chr9:86012600-86018200	Weak transcription	Left Ventricle	heart
5	chr9:86012800-86016000	Weak transcription	HepG2	liver
6	chr9:86013400-86041000	Weak transcription	Aorta	Aorta
7	chr9:86013800-86014000	Enhancers	Fetal Kidney	kidney

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links