Variant report

Variant	rs12339003
Chromosome Location	chr9:86018406-86018407
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:86011563..86014986-chr9:86016916..86020141,4	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10217271	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10217435	0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10217669	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10217746	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10217752	1.00[ASN][1000 genomes]
rs11140068	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11140071	1.00[ASN][1000 genomes]
rs11140080	0.98[ASN][1000 genomes]
rs11140081	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11140085	0.92[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11998876	1.00[ASN][1000 genomes]
rs12000173	1.00[ASN][1000 genomes]
rs12005884	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12337733	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12340422	0.80[CEU][hapmap];0.92[CHB][hapmap]
rs12346296	0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12350642	0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12551179	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12553050	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17086251	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3889596	0.83[CHB][hapmap];0.81[CHD][hapmap]
rs3893399	0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4877758	0.85[MEX][hapmap]
rs61424289	0.88[ASN][1000 genomes]
rs73465724	1.00[ASN][1000 genomes]
rs73465767	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046491	chr9:85861492-86063992	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86000000-86020600	Weak transcription	Fetal Brain Female	brain
2	chr9:86005400-86021000	Weak transcription	Right Atrium	heart
3	chr9:86013400-86041000	Weak transcription	Aorta	Aorta
4	chr9:86016600-86023600	Weak transcription	HepG2	liver
5	chr9:86017400-86034400	Weak transcription	Psoas Muscle	Psoas
6	chr9:86018000-86019600	Enhancers	HSMMtube	muscle
7	chr9:86018200-86018600	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr9:86018200-86019000	Enhancers	Left Ventricle	heart
9	chr9:86018200-86019200	Enhancers	Fetal Muscle Leg	muscle
10	chr9:86018200-86019400	Enhancers	Adipose Nuclei	Adipose
11	chr9:86018400-86018600	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr9:86018400-86018800	Enhancers	Fetal Kidney	kidney
13	chr9:86018400-86019000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:86018400-86019000	Enhancers	Stomach Smooth Muscle	stomach
15	chr9:86018400-86019400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr9:86018400-86019400	Enhancers	NH-A	brain
17	chr9:86018400-86019600	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr9:86018400-86019800	Enhancers	Fetal Heart	heart

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