Variant report

Variant	rs55835241
Chromosome Location	chr7:19569402-19569403
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1029997	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10441041	0.86[EUR][1000 genomes]
rs17141526	1.00[EUR][1000 genomes]
rs2024351	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2110475	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4621698	0.95[EUR][1000 genomes]
rs55745073	1.00[AMR][1000 genomes]
rs55828356	0.86[EUR][1000 genomes]
rs55910326	0.86[EUR][1000 genomes]
rs55941254	1.00[AMR][1000 genomes]
rs55984465	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55996046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56047253	0.83[AMR][1000 genomes]
rs56051858	0.83[AMR][1000 genomes]
rs56061124	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56236236	0.83[AMR][1000 genomes]
rs6954559	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6955902	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6963505	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6975880	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6979888	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6980414	0.86[EUR][1000 genomes]
rs73072922	0.83[AMR][1000 genomes]
rs73072932	0.83[AMR][1000 genomes]
rs73072934	0.83[AMR][1000 genomes]
rs73072937	0.83[AMR][1000 genomes]
rs73074934	1.00[AMR][1000 genomes]
rs73074936	1.00[AMR][1000 genomes]
rs73074937	1.00[AMR][1000 genomes]
rs73074938	1.00[AMR][1000 genomes]
rs73074939	1.00[AMR][1000 genomes]
rs73074946	1.00[AMR][1000 genomes]
rs73074951	1.00[AMR][1000 genomes]
rs73074959	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73077069	1.00[EUR][1000 genomes]
rs73077073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73077074	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73077079	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73083218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73083220	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73083222	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73084653	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73084656	0.86[EUR][1000 genomes]
rs73084660	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73084662	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73084671	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73084690	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73086604	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73086607	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73086629	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73086633	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73086640	0.83[AMR][1000 genomes]
rs73086644	0.83[AMR][1000 genomes]
rs73086652	0.83[AMR][1000 genomes]
rs73086653	0.83[AMR][1000 genomes]
rs73086681	0.83[AMR][1000 genomes]
rs73086685	0.83[AMR][1000 genomes]
rs73086687	0.83[AMR][1000 genomes]
rs7458820	0.86[EUR][1000 genomes]
rs7803523	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv887819	chr7:19262091-19658389	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1018601	chr7:19272360-20008881	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
3	esv2752996	chr7:19392086-19684019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2757219	chr7:19396146-19574066	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv2759517	chr7:19396146-19620962	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv34500	chr7:19415543-19573763	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv2758107	chr7:19436043-19620962	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv2752153	chr7:19509002-19620651	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv887824	chr7:19524863-19687779	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv887825	chr7:19536977-19615992	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv1026185	chr7:19564488-19612246	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19563400-19577400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:19567400-19569600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:19569400-19570200	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links