Variant report

Variant	rs55845807
Chromosome Location	chr6:149771092-149771093
allele	-/G/GTGTGTGT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:149770891-149772320	GM12878	blood:	n/a	n/a
2	POLR2A	chr6:149770919-149771956	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149769726..149773853-chr6:149775332..149778151,3	K562	blood:

Variant related genes	Relation type
ZC3H12D	TF binding region
ENSG00000178199	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv470866	chr6:149744632-149806552	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv5533	chr6:149748047-149793072	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv464076	chr6:149755695-149798835	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv604846	chr6:149755695-149798835	ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3355637	chr6:149769659-149774457	Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv3374188	chr6:149770709-149773207	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149763200-149771400	Weak transcription	Pancreas	Pancrea
2	chr6:149764800-149771400	Weak transcription	Spleen	Spleen
3	chr6:149765200-149771400	Weak transcription	Brain Anterior Caudate	brain
4	chr6:149766000-149771400	Weak transcription	Right Atrium	heart
5	chr6:149766200-149771200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:149766600-149773000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:149766800-149771400	Weak transcription	Left Ventricle	heart
8	chr6:149766800-149771600	Weak transcription	Lung	lung
9	chr6:149767400-149772800	Weak transcription	HepG2	liver
10	chr6:149768400-149771600	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr6:149768400-149779400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr6:149768600-149771600	Weak transcription	Gastric	stomach
13	chr6:149769600-149771400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:149769600-149782800	Strong transcription	Primary B cells from peripheral blood	blood
15	chr6:149769600-149787200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:149769800-149771400	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr6:149769800-149779800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:149770000-149773000	Weak transcription	Primary B cells from cord blood	blood
19	chr6:149770000-149779600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:149770000-149785200	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr6:149770400-149771400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:149770400-149771600	Weak transcription	Esophagus	oesophagus
23	chr6:149771000-149771200	Enhancers	Hela-S3	cervix
24	chr6:149771000-149771400	Active TSS	Rectal Mucosa Donor 29	rectum
25	chr6:149771000-149771400	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr6:149771000-149771600	Enhancers	Brain Angular Gyrus	brain
27	chr6:149771000-149771600	Bivalent Enhancer	Fetal Intestine Small	intestine
28	chr6:149771000-149771600	Strong transcription	GM12878-XiMat	blood
29	chr6:149771000-149771800	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
30	chr6:149771000-149773400	Enhancers	Fetal Heart	heart

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