Variant report

Variant	rs55848868
Chromosome Location	chr20:22500494-22500495
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1157319	1.00[AMR][1000 genomes]
rs12624528	1.00[AMR][1000 genomes]
rs1415812	1.00[AMR][1000 genomes]
rs16984026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16984047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1933205	1.00[AMR][1000 genomes]
rs3920804	1.00[AMR][1000 genomes]
rs55643169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55663904	1.00[AMR][1000 genomes]
rs55789916	1.00[AMR][1000 genomes]
rs58225430	1.00[AMR][1000 genomes]
rs60516763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6106535	1.00[AMR][1000 genomes]
rs61590736	1.00[AMR][1000 genomes]
rs72470560	1.00[AMR][1000 genomes]
rs7270376	1.00[AMR][1000 genomes]
rs7270463	1.00[AMR][1000 genomes]
rs73900505	1.00[AMR][1000 genomes]
rs73900511	1.00[AMR][1000 genomes]
rs73900515	1.00[AMR][1000 genomes]
rs73900516	1.00[AMR][1000 genomes]
rs73900531	1.00[AMR][1000 genomes]
rs73900532	1.00[AMR][1000 genomes]
rs73900535	1.00[AMR][1000 genomes]
rs73902812	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902816	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902849	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902851	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902855	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902857	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902859	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902863	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902864	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902865	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902866	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902868	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902874	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73902880	1.00[AMR][1000 genomes]
rs73902892	1.00[AMR][1000 genomes]
rs73902898	1.00[AMR][1000 genomes]
rs73902900	1.00[AMR][1000 genomes]
rs73902901	1.00[AMR][1000 genomes]
rs73902902	1.00[AMR][1000 genomes]
rs73904107	1.00[AMR][1000 genomes]
rs8118829	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066578	chr20:22472671-22513844	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22496200-22503800	Weak transcription	Pancreas	Pancrea
2	chr20:22496400-22501000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:22498200-22503800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr20:22500000-22500600	Strong transcription	Liver	Liver
5	chr20:22500000-22501200	Enhancers	HepG2	liver

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