Variant report

Variant	rs73900505
Chromosome Location	chr20:22571340-22571341
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1157319	1.00[AMR][1000 genomes]
rs12624528	1.00[AMR][1000 genomes]
rs1415812	1.00[AMR][1000 genomes]
rs16984026	1.00[AMR][1000 genomes]
rs16984047	1.00[AMR][1000 genomes]
rs1933205	1.00[AMR][1000 genomes]
rs3920804	1.00[AMR][1000 genomes]
rs55643169	1.00[AMR][1000 genomes]
rs55663904	1.00[AMR][1000 genomes]
rs55789916	1.00[AMR][1000 genomes]
rs55848868	1.00[AMR][1000 genomes]
rs58225430	1.00[AMR][1000 genomes]
rs60516763	1.00[AMR][1000 genomes]
rs6106535	1.00[AMR][1000 genomes]
rs61590736	1.00[AMR][1000 genomes]
rs72470560	1.00[AMR][1000 genomes]
rs7270376	1.00[AMR][1000 genomes]
rs7270463	1.00[AMR][1000 genomes]
rs73900511	1.00[AMR][1000 genomes]
rs73900515	1.00[AMR][1000 genomes]
rs73900516	1.00[AMR][1000 genomes]
rs73900531	1.00[AMR][1000 genomes]
rs73900532	1.00[AMR][1000 genomes]
rs73900535	1.00[AMR][1000 genomes]
rs73902812	1.00[AMR][1000 genomes]
rs73902816	1.00[AMR][1000 genomes]
rs73902820	1.00[AMR][1000 genomes]
rs73902823	1.00[AMR][1000 genomes]
rs73902824	1.00[AMR][1000 genomes]
rs73902838	1.00[AMR][1000 genomes]
rs73902839	1.00[AMR][1000 genomes]
rs73902840	1.00[AMR][1000 genomes]
rs73902841	1.00[AMR][1000 genomes]
rs73902843	1.00[AMR][1000 genomes]
rs73902845	1.00[AMR][1000 genomes]
rs73902848	1.00[AMR][1000 genomes]
rs73902849	1.00[AMR][1000 genomes]
rs73902851	1.00[AMR][1000 genomes]
rs73902855	1.00[AMR][1000 genomes]
rs73902857	1.00[AMR][1000 genomes]
rs73902859	1.00[AMR][1000 genomes]
rs73902863	1.00[AMR][1000 genomes]
rs73902864	1.00[AMR][1000 genomes]
rs73902865	1.00[AMR][1000 genomes]
rs73902866	1.00[AMR][1000 genomes]
rs73902868	1.00[AMR][1000 genomes]
rs73902874	1.00[AMR][1000 genomes]
rs73902880	1.00[AMR][1000 genomes]
rs73902892	1.00[AMR][1000 genomes]
rs73902898	1.00[AMR][1000 genomes]
rs73902900	1.00[AMR][1000 genomes]
rs73902901	1.00[AMR][1000 genomes]
rs73902902	1.00[AMR][1000 genomes]
rs73904107	1.00[AMR][1000 genomes]
rs8118829	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22570400-22571600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
2	chr20:22570400-22572400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
3	chr20:22570600-22572600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
4	chr20:22570800-22572600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
5	chr20:22571000-22572600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
6	chr20:22571200-22571400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
7	chr20:22571200-22571400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
8	chr20:22571200-22571600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
9	chr20:22571200-22571800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr20:22571200-22572000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr20:22571200-22572200	Enhancers	H9 Cell Line	embryonic stem cell

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