Variant report

Variant	rs73900515
Chromosome Location	chr20:22607102-22607103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22606156..22608487-chr20:22609283..22611792,2	MCF-7	breast:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10485632	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1157319	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11907070	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12624528	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12624618	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12625453	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1415812	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16984026	1.00[AMR][1000 genomes]
rs16984047	1.00[AMR][1000 genomes]
rs16984204	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16984209	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16984212	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16984243	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17754147	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1890205	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1933205	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3920804	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55643169	1.00[AMR][1000 genomes]
rs55663904	1.00[AMR][1000 genomes]
rs55789916	1.00[AMR][1000 genomes]
rs55848868	1.00[AMR][1000 genomes]
rs58225430	1.00[AMR][1000 genomes]
rs59654629	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60516763	1.00[AMR][1000 genomes]
rs6106535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6132534	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6137709	0.85[ASN][1000 genomes]
rs6137710	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61590736	1.00[AMR][1000 genomes]
rs72470560	1.00[AMR][1000 genomes]
rs7265984	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7270376	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7270463	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73900505	1.00[AMR][1000 genomes]
rs73900508	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73900510	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73900511	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73900516	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73900517	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73900531	1.00[AMR][1000 genomes]
rs73900532	1.00[AMR][1000 genomes]
rs73900535	1.00[AMR][1000 genomes]
rs73902812	1.00[AMR][1000 genomes]
rs73902816	1.00[AMR][1000 genomes]
rs73902820	1.00[AMR][1000 genomes]
rs73902823	1.00[AMR][1000 genomes]
rs73902824	1.00[AMR][1000 genomes]
rs73902838	1.00[AMR][1000 genomes]
rs73902839	1.00[AMR][1000 genomes]
rs73902840	1.00[AMR][1000 genomes]
rs73902841	1.00[AMR][1000 genomes]
rs73902843	1.00[AMR][1000 genomes]
rs73902845	1.00[AMR][1000 genomes]
rs73902848	1.00[AMR][1000 genomes]
rs73902849	1.00[AMR][1000 genomes]
rs73902851	1.00[AMR][1000 genomes]
rs73902855	1.00[AMR][1000 genomes]
rs73902857	1.00[AMR][1000 genomes]
rs73902859	1.00[AMR][1000 genomes]
rs73902863	1.00[AMR][1000 genomes]
rs73902864	1.00[AMR][1000 genomes]
rs73902865	1.00[AMR][1000 genomes]
rs73902866	1.00[AMR][1000 genomes]
rs73902868	1.00[AMR][1000 genomes]
rs73902874	1.00[AMR][1000 genomes]
rs73902880	1.00[AMR][1000 genomes]
rs73902892	1.00[AMR][1000 genomes]
rs73902898	1.00[AMR][1000 genomes]
rs73902900	1.00[AMR][1000 genomes]
rs73902901	1.00[AMR][1000 genomes]
rs73902902	1.00[AMR][1000 genomes]
rs73904107	1.00[AMR][1000 genomes]
rs8118829	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1064571	chr20:22601105-22645251	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22601600-22607200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr20:22603800-22611200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr20:22607000-22607200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr20:22607000-22607200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr20:22607000-22607400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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