Variant report

Variant	rs16984212
Chromosome Location	chr20:22599605-22599606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22590072..22592802-chr20:22598328..22601056,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SSTR4-5	chr20:22598991-22599674	XLOC_013485

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10485632	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1157319	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11907070	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12624528	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12624618	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12625453	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1415812	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16984204	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16984209	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16984243	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17754147	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1890205	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1933205	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3920804	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59654629	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6106535	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6132534	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6137709	0.85[ASN][1000 genomes]
rs6137710	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7265984	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7270376	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7270463	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73900508	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73900510	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73900511	1.00[ASN][1000 genomes]
rs73900515	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73900516	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73900517	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22595000-22601800	Enhancers	Stomach Mucosa	stomach
2	chr20:22596400-22600200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr20:22598200-22600600	Enhancers	A549	lung
4	chr20:22598200-22603600	Weak transcription	Spleen	Spleen
5	chr20:22599000-22601800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr20:22599600-22600600	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr20:22599600-22600800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
8	chr20:22599600-22602000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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