Variant report

Variant	rs73900517
Chromosome Location	chr20:22611323-22611324
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22601486..22604193-chr20:22610094..22612401,2	MCF-7	breast:
2	chr20:22606156..22608487-chr20:22609283..22611792,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10485632	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1157319	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11907070	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12624528	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12624618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12625453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1415812	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16984204	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16984209	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16984212	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16984243	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17754147	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1890205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1933205	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3920804	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59654629	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6106535	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6132534	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6137709	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6137710	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7265984	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7270376	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7270463	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73900508	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73900510	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73900511	0.95[ASN][1000 genomes]
rs73900515	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73900516	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1064571	chr20:22601105-22645251	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22610200-22611600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr20:22610200-22611600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr20:22610400-22611400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr20:22610400-22611600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr20:22610400-22611600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr20:22610800-22611600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr20:22611000-22611600	Enhancers	H1 Cell Line	embryonic stem cell
8	chr20:22611200-22611600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr20:22611200-22611600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr20:22611200-22611600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr20:22611200-22611600	Enhancers	Stomach Mucosa	stomach
12	chr20:22611200-22611800	Enhancers	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links