Variant report

Variant	rs6132534
Chromosome Location	chr20:22628644-22628645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22627996..22631252-chr20:22637108..22639822,3	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10485632	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1157319	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11907070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12624528	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12624618	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12625453	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1415812	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16984204	1.00[EUR][1000 genomes]
rs16984209	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16984212	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16984243	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16984276	0.81[ASN][1000 genomes]
rs16984277	0.81[ASN][1000 genomes]
rs16984278	0.81[ASN][1000 genomes]
rs16984285	0.81[ASN][1000 genomes]
rs17754147	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1890205	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1933205	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3920804	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59654629	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6048237	0.81[ASN][1000 genomes]
rs6106535	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6113753	0.81[ASN][1000 genomes]
rs6113754	0.81[ASN][1000 genomes]
rs6113755	0.81[ASN][1000 genomes]
rs6137709	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6137710	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7265984	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7270376	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7270463	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7362683	0.81[ASN][1000 genomes]
rs73900508	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73900510	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73900511	0.83[ASN][1000 genomes]
rs73900515	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73900516	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73900517	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73900526	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1064571	chr20:22601105-22645251	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22627200-22629600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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