Variant report

Variant	rs59654629
Chromosome Location	chr20:22587022-22587023
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22586398..22587122-chr3:21089488..21090217,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10485632	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1157319	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11907070	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12624528	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12624618	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12625453	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1415812	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16984204	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16984209	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16984212	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16984243	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17754147	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1890205	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1933205	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3920804	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6106535	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6132534	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6137709	0.85[ASN][1000 genomes]
rs6137710	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7265984	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7270376	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7270463	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73900508	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73900510	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73900511	1.00[ASN][1000 genomes]
rs73900515	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73900516	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73900517	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428690	chr20:22528757-22649625	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22586400-22587400	Enhancers	H9 Cell Line	embryonic stem cell
2	chr20:22586600-22587200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr20:22586800-22587200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr20:22586800-22587600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr20:22587000-22587400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links