Variant report
| Variant | rs6137709 |
|---|---|
| Chromosome Location | chr20:22626239-22626240 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10485632 | 0.85[ASN][1000 genomes] |
| rs1157319 | 0.88[ASN][1000 genomes] |
| rs11907070 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12624528 | 0.85[ASN][1000 genomes] |
| rs12624618 | 1.00[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12625453 | 1.00[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1415812 | 0.90[ASN][1000 genomes] |
| rs16984204 | 0.81[ASN][1000 genomes] |
| rs16984209 | 0.85[ASN][1000 genomes] |
| rs16984212 | 0.85[ASN][1000 genomes] |
| rs16984243 | 1.00[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs17754147 | 0.85[ASN][1000 genomes] |
| rs1890205 | 1.00[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1933205 | 0.85[ASN][1000 genomes] |
| rs3920804 | 0.85[ASN][1000 genomes] |
| rs59654629 | 0.85[ASN][1000 genomes] |
| rs6106535 | 0.88[ASN][1000 genomes] |
| rs6132534 | 1.00[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6137710 | 1.00[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7265984 | 0.85[ASN][1000 genomes] |
| rs7270376 | 0.88[ASN][1000 genomes] |
| rs7270463 | 0.86[ASN][1000 genomes] |
| rs73900508 | 0.85[ASN][1000 genomes] |
| rs73900510 | 0.85[ASN][1000 genomes] |
| rs73900511 | 0.85[ASN][1000 genomes] |
| rs73900515 | 0.85[ASN][1000 genomes] |
| rs73900516 | 0.88[ASN][1000 genomes] |
| rs73900517 | 1.00[AMR][1000 genomes];0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428690 | chr20:22528757-22649625 | Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv1064571 | chr20:22601105-22645251 | Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:22624600-22627200 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
