Variant report

Variant	rs55849543
Chromosome Location	chr5:154091684-154091685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154082225..154089110-chr5:154090425..154094066,7	MCF-7	breast:
2	chr5:154091014..154094062-chr5:154133007..154138054,7	MCF-7	breast:
3	chr5:154090008..154095548-chr5:154132332..154137735,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155506	Chromatin interaction
ENSG00000263478	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11740589	1.00[ASN][1000 genomes]
rs3853757	1.00[ASN][1000 genomes]
rs3867429	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6863954	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797583	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73276703	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7710726	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7734591	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs55849543	LARP1	cis	Whole Blood	GTEx

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154071400-154093400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:154072200-154092600	Weak transcription	Adipose Nuclei	Adipose
3	chr5:154072400-154091800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:154074200-154108600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr5:154074200-154120000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:154077400-154091800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:154077400-154091800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:154081400-154091800	Weak transcription	Fetal Intestine Small	intestine
9	chr5:154081600-154092000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr5:154081800-154091800	Weak transcription	Esophagus	oesophagus
11	chr5:154082400-154091800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr5:154083000-154092200	Weak transcription	Left Ventricle	heart
13	chr5:154086600-154092000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:154087800-154092600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr5:154088000-154092000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr5:154088600-154091800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:154088600-154098200	Weak transcription	Right Atrium	heart
18	chr5:154088800-154091800	Weak transcription	Hela-S3	cervix
19	chr5:154088800-154091800	Weak transcription	NHEK	skin
20	chr5:154088800-154092000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr5:154088800-154092200	Weak transcription	K562	blood
22	chr5:154088800-154092600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr5:154089000-154092000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr5:154089000-154092400	Weak transcription	HMEC	breast
25	chr5:154089000-154092600	Weak transcription	NHDF-Ad	bronchial
26	chr5:154089000-154093400	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr5:154089200-154092600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr5:154089400-154091800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr5:154089600-154091800	Weak transcription	Liver	Liver
30	chr5:154089600-154092600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr5:154089600-154093000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr5:154089600-154093200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr5:154089800-154091800	Weak transcription	Lung	lung
34	chr5:154089800-154092000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr5:154089800-154092000	Weak transcription	Right Ventricle	heart
36	chr5:154090000-154092400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr5:154090000-154093200	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr5:154091000-154091800	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr5:154091000-154092000	Enhancers	H1 Cell Line	embryonic stem cell
40	chr5:154091000-154092000	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr5:154091400-154091800	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr5:154091400-154091800	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr5:154091400-154091800	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr5:154091400-154092200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
45	chr5:154091600-154091800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr5:154091600-154091800	Enhancers	Duodenum Mucosa	Duodenum
47	chr5:154091600-154091800	Enhancers	Pancreatic Islets	Pancreatic Islet
48	chr5:154091600-154091800	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr5:154091600-154091800	Enhancers	Stomach Mucosa	stomach
50	chr5:154091600-154092000	Enhancers	HepG2	liver

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