Variant report

Variant	rs7734591
Chromosome Location	chr5:154085600-154085601
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154085572..154087981-chr5:154091818..154094723,2	K562	blood:
2	chr5:154084447..154086272-chr5:154100448..154103273,2	K562	blood:
3	chr5:154082225..154089110-chr5:154090425..154094066,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155506	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11740589	1.00[ASN][1000 genomes]
rs3853757	1.00[ASN][1000 genomes]
rs3867429	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55849543	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6863954	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72797583	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73276703	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7710726	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7734591	LARP1	cis	Whole Blood	GTEx

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154071400-154093400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:154072200-154092600	Weak transcription	Adipose Nuclei	Adipose
3	chr5:154072400-154091800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:154074200-154108600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr5:154074200-154120000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:154077200-154091600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:154077400-154091800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:154077400-154091800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:154077800-154090400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr5:154078800-154089400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr5:154081400-154091800	Weak transcription	Fetal Intestine Small	intestine
12	chr5:154081600-154092000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr5:154081800-154087800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr5:154081800-154088000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr5:154081800-154088400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr5:154081800-154091800	Weak transcription	Esophagus	oesophagus
17	chr5:154082400-154091600	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr5:154082400-154091800	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr5:154082800-154087400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr5:154083000-154092200	Weak transcription	Left Ventricle	heart
21	chr5:154084000-154087600	Weak transcription	HepG2	liver

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