Variant report

Variant	rs73276703
Chromosome Location	chr5:154088617-154088618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr5:154088389-154089012	MCF10A-Er-Src	breast:	n/a	n/a
2	ARID3A	chr5:154088459-154088701	HepG2	liver:	n/a	n/a
3	JUND	chr5:154088402-154088750	HepG2	liver:	n/a	chr5:154088580-154088591
4	CEBPB	chr5:154088415-154088768	HepG2	liver:	n/a	n/a
5	STAT3	chr5:154088403-154088748	MCF10A-Er-Src	breast:	n/a	n/a
6	RFX5	chr5:154088486-154088777	Hela-S3	cervix:	n/a	n/a
7	MYC	chr5:154088425-154088875	MCF10A-Er-Src	breast:	n/a	n/a
8	MAFF	chr5:154088515-154088641	HepG2	liver:	n/a	n/a
9	USF2	chr5:154088482-154088883	Hela-S3	cervix:	n/a	n/a
10	CHD2	chr5:154088546-154088746	Hela-S3	cervix:	n/a	n/a
11	MAFK	chr5:154088461-154088761	Hela-S3	cervix:	n/a	n/a
12	JUN	chr5:154088458-154088716	HepG2	liver:	n/a	n/a
13	JUND	chr5:154088424-154088769	Hela-S3	cervix:	n/a	chr5:154088580-154088591
14	FOS	chr5:154088344-154088840	MCF10A-Er-Src	breast:	n/a	n/a
15	BRCA1	chr5:154088436-154088717	Hela-S3	cervix:	n/a	n/a
16	CTCF	chr5:154088600-154088750	HEEpiC	esophagus:	n/a	n/a
17	FOSL2	chr5:154088390-154088705	HepG2	liver:	n/a	n/a
18	CEBPB	chr5:154088401-154088804	Hela-S3	cervix:	n/a	n/a
19	CTCF	chr5:154088580-154088730	HCT-116	colon:	n/a	n/a
20	FOS	chr5:154088344-154088779	MCF10A-Er-Src	breast:	n/a	n/a
21	MAX	chr5:154088436-154088823	Hela-S3	cervix:	n/a	n/a
22	SPI1	chr5:154088610-154088754	K562	blood:	n/a	n/a
23	CEBPB	chr5:154088480-154088707	A549	lung:	n/a	n/a
24	FOS	chr5:154088389-154088813	MCF10A-Er-Src	breast:	n/a	n/a
25	FOSL1	chr5:154088422-154088853	HCT-116	colon:	n/a	n/a
26	MYC	chr5:154088502-154088847	NB4	blood:	n/a	n/a
27	BHLHE40	chr5:154088557-154088758	K562	blood:	n/a	n/a
28	RCOR1	chr5:154088493-154088707	Hela-S3	cervix:	n/a	n/a
29	JUND	chr5:154088511-154088692	K562	blood:	n/a	chr5:154088580-154088591
30	MAX	chr5:154088446-154088840	NB4	blood:	n/a	n/a
31	CTCF	chr5:154088600-154088750	SAEC	small airway:	n/a	n/a
32	FOXA2	chr5:154088394-154088723	HepG2	liver:	n/a	n/a
33	MAFK	chr5:154088505-154088705	HepG2	liver:	n/a	n/a
34	JUND	chr5:154088357-154088802	HCT-116	colon:	n/a	chr5:154088580-154088591
35	CEBPB	chr5:154088423-154088707	IMR90	lung:	n/a	n/a
36	BHLHE40	chr5:154088487-154088727	HepG2	liver:	n/a	n/a
37	POLR2A	chr5:154088486-154088786	MCF10A-Er-Src	breast:	n/a	n/a
38	SMC3	chr5:154088486-154088789	Hela-S3	cervix:	n/a	n/a
39	FOS	chr5:154088347-154089190	MCF10A-Er-Src	breast:	n/a	n/a
40	MXI1	chr5:154088496-154088649	HepG2	liver:	n/a	n/a
41	STAT3	chr5:154088458-154088748	MCF10A-Er-Src	breast:	n/a	n/a
42	EP300	chr5:154088457-154088763	Hela-S3	cervix:	n/a	n/a
43	MAX	chr5:154088433-154088754	K562	blood:	n/a	n/a
44	STAT3	chr5:154088460-154088857	MCF10A-Er-Src	breast:	n/a	n/a
45	STAT3	chr5:154088414-154088817	MCF10A-Er-Src	breast:	n/a	n/a
46	RAD21	chr5:154088475-154088850	Hela-S3	cervix:	n/a	n/a
47	E2F4	chr5:154088482-154088725	MCF10A-Er-Src	breast:	n/a	n/a
48	JUND	chr5:154088428-154088692	HepG2	liver:	n/a	chr5:154088580-154088591
49	JUND	chr5:154088289-154088837	HCT-116	colon:	n/a	chr5:154088580-154088591
50	USF2	chr5:154088515-154088688	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154082225..154089110-chr5:154090425..154094066,7	MCF-7	breast:

Variant related genes	Relation type
LARP1	TF binding region
ENSG00000155506	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs3867429	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55849543	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6863954	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7710726	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7734591	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73276703	LARP1	cis	Whole Blood	GTEx

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154071400-154093400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:154072200-154092600	Weak transcription	Adipose Nuclei	Adipose
3	chr5:154072400-154091800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:154074200-154108600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr5:154074200-154120000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:154077200-154091600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:154077400-154091800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:154077400-154091800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:154077800-154090400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr5:154078800-154089400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr5:154081400-154091800	Weak transcription	Fetal Intestine Small	intestine
12	chr5:154081600-154092000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr5:154081800-154091800	Weak transcription	Esophagus	oesophagus
14	chr5:154082400-154091600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr5:154082400-154091800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr5:154083000-154092200	Weak transcription	Left Ventricle	heart
17	chr5:154086400-154091400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr5:154086600-154092000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr5:154087400-154089600	Enhancers	Liver	Liver
20	chr5:154087600-154088800	Enhancers	HepG2	liver
21	chr5:154087800-154088800	Enhancers	Hela-S3	cervix
22	chr5:154087800-154089800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr5:154087800-154090000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr5:154087800-154092600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr5:154088000-154088800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr5:154088000-154089000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr5:154088000-154089000	Enhancers	HMEC	breast
28	chr5:154088000-154090000	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr5:154088000-154092000	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr5:154088400-154088800	Enhancers	Muscle Satellite Cultured Cells	--
31	chr5:154088400-154088800	Enhancers	K562	blood
32	chr5:154088400-154089000	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr5:154088400-154089000	Enhancers	NHDF-Ad	bronchial
34	chr5:154088400-154089200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr5:154088400-154089400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr5:154088600-154088800	Enhancers	Duodenum Mucosa	Duodenum
37	chr5:154088600-154088800	Enhancers	NHEK	skin
38	chr5:154088600-154089600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr5:154088600-154091800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr5:154088600-154098200	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links