Variant report

Variant	rs55851633
Chromosome Location	chr5:71048378-71048379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16872110	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3914615	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55819129	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55978012	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56282615	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57843916	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62360710	0.83[AMR][1000 genomes]
rs62360711	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62360715	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62360718	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6867694	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6867696	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6869080	1.00[ASN][1000 genomes]
rs6891713	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72769469	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72769479	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:71040400-71053200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:71045400-71053600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr5:71046000-71048400	Weak transcription	Stomach Mucosa	stomach
4	chr5:71047000-71048800	Enhancers	HepG2	liver
5	chr5:71048200-71048600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:71048200-71048600	Enhancers	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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