Variant report

Variant	rs3914615
Chromosome Location	chr5:71041430-71041431
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:71040996..71045955-chr5:71047469..71049990,6	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs16871509	0.93[JPT][hapmap]
rs16872110	0.85[CEU][hapmap];0.89[CHB][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4057258	0.89[CHB][hapmap];0.88[CHD][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs4057259	0.89[CHB][hapmap];0.92[JPT][hapmap]
rs55819129	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55851633	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55978012	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56282615	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57843916	0.91[EUR][1000 genomes]
rs59245253	0.92[ASN][1000 genomes]
rs60286869	0.81[ASN][1000 genomes]
rs62360705	0.81[ASN][1000 genomes]
rs62360710	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62360711	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62360715	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62360718	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6867694	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6867696	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6869080	0.83[ASN][1000 genomes]
rs6891713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.93[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72769463	0.92[ASN][1000 genomes]
rs72769469	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72769479	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:71040400-71044200	Weak transcription	Gastric	stomach
2	chr5:71040400-71044200	Weak transcription	Pancreas	Pancrea
3	chr5:71040400-71044400	Weak transcription	Fetal Intestine Small	intestine
4	chr5:71040400-71053200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:71040600-71044000	Weak transcription	Stomach Mucosa	stomach
6	chr5:71040600-71044400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr5:71040800-71044000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr5:71040800-71044200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr5:71041200-71044000	Weak transcription	Rectal Mucosa Donor 31	rectum

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