Variant report

Variant	rs72769479
Chromosome Location	chr5:71046366-71046367
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16872110	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3914615	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55819129	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55851633	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55978012	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56282615	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57843916	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62360710	0.83[AMR][1000 genomes]
rs62360711	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62360715	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62360718	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6867694	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6867696	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6869080	0.96[ASN][1000 genomes]
rs6891713	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72769469	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:71040400-71053200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:71044200-71046400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr5:71044200-71046600	Enhancers	Gastric	stomach
4	chr5:71045200-71048200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr5:71045400-71053600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr5:71046000-71048400	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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