Variant report

Variant	rs55863343
Chromosome Location	chr7:99232178-99232179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99216120..99218766-chr7:99230019..99232537,3	MCF-7	breast:
2	chr7:99223092..99225778-chr7:99231932..99235796,4	K562	blood:

Variant related genes	Relation type
ENSG00000197037	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs28365076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28969395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41300725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41301655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41303952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs45571732	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs45613141	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55817676	0.89[AFR][1000 genomes]
rs56145886	0.89[AFR][1000 genomes]
rs58895239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73405282	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406803	1.00[AMR][1000 genomes]
rs73408528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408566	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408573	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410637	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410646	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv981815	chr7:99224245-99235459	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99215000-99236000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:99215800-99232200	Strong transcription	Fetal Stomach	stomach
3	chr7:99216200-99232200	Strong transcription	Primary B cells from peripheral blood	blood
4	chr7:99216200-99232200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr7:99216200-99232200	Strong transcription	Lung	lung
6	chr7:99216400-99232400	Strong transcription	Brain Germinal Matrix	brain
7	chr7:99218000-99232200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:99220600-99232200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:99222600-99232200	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr7:99223000-99232600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr7:99223600-99232200	Strong transcription	Fetal Thymus	thymus
12	chr7:99223800-99232200	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr7:99223800-99232800	Strong transcription	Primary T cells from cord blood	blood
14	chr7:99224000-99241800	Weak transcription	HSMMtube	muscle
15	chr7:99225200-99233200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr7:99225400-99232600	Weak transcription	Fetal Heart	heart
17	chr7:99225400-99243000	Weak transcription	Fetal Brain Male	brain
18	chr7:99225800-99241800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr7:99226200-99232400	Weak transcription	Fetal Kidney	kidney
20	chr7:99228200-99244200	Weak transcription	Psoas Muscle	Psoas
21	chr7:99228400-99236000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr7:99228400-99258000	Weak transcription	Colon Smooth Muscle	Colon
23	chr7:99228400-99258800	Weak transcription	Ovary	ovary
24	chr7:99228600-99233600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr7:99228800-99249000	Weak transcription	Small Intestine	intestine
26	chr7:99229000-99233000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr7:99229000-99233400	Weak transcription	NH-A	brain
28	chr7:99229000-99235800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:99229200-99241600	Weak transcription	Brain Angular Gyrus	brain
30	chr7:99229200-99242000	Weak transcription	NHDF-Ad	bronchial
31	chr7:99229200-99243200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr7:99229200-99267400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr7:99229200-99275000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr7:99229400-99233000	Weak transcription	Osteobl	bone
35	chr7:99229400-99236000	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr7:99229400-99236800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr7:99229400-99257400	Weak transcription	Fetal Lung	lung
38	chr7:99229400-99257800	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr7:99229600-99236200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr7:99229800-99232200	Strong transcription	Fetal Intestine Small	intestine
41	chr7:99229800-99232200	Strong transcription	Fetal Muscle Leg	muscle
42	chr7:99229800-99235600	Weak transcription	Right Ventricle	heart
43	chr7:99229800-99235800	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr7:99229800-99235800	Weak transcription	HSMM	muscle
45	chr7:99229800-99236000	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr7:99229800-99241200	Weak transcription	Aorta	Aorta
47	chr7:99229800-99255400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr7:99229800-99257200	Weak transcription	Esophagus	oesophagus
49	chr7:99229800-99257600	Weak transcription	Pancreas	Pancrea
50	chr7:99229800-99260200	Weak transcription	Left Ventricle	heart

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