Variant report

Variant	rs73410646
Chromosome Location	chr7:99322404-99322405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs28365076	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28969395	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41300725	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41301655	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41303952	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs45571732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs45613141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55817676	0.95[AFR][1000 genomes]
rs55863343	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56145886	0.95[AFR][1000 genomes]
rs57405460	0.81[AFR][1000 genomes]
rs58895239	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73405282	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406803	1.00[AMR][1000 genomes]
rs73408528	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408555	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv970911	chr7:99275492-99333590	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv888771	chr7:99294762-99355278	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv3378448	chr7:99295540-99331065	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99303200-99337200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr7:99306000-99339000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:99306800-99340800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:99307200-99334400	Weak transcription	Left Ventricle	heart
5	chr7:99311800-99349000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr7:99314800-99334400	Weak transcription	Esophagus	oesophagus
7	chr7:99315600-99331200	Weak transcription	Aorta	Aorta
8	chr7:99318000-99334600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr7:99318200-99326000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:99318800-99323400	Weak transcription	Stomach Mucosa	stomach
11	chr7:99319200-99327800	Weak transcription	Primary T cells from cord blood	blood
12	chr7:99320000-99337200	Weak transcription	Brain Angular Gyrus	brain
13	chr7:99320600-99326400	Weak transcription	Fetal Lung	lung
14	chr7:99321800-99338200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr7:99322400-99323200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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