Variant report

Variant	rs55866155
Chromosome Location	chr11:33574459-33574460
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16924475	1.00[AMR][1000 genomes]
rs16924480	1.00[AMR][1000 genomes]
rs55681209	1.00[AMR][1000 genomes]
rs55689162	1.00[AMR][1000 genomes]
rs56285800	1.00[AMR][1000 genomes]
rs56306742	1.00[AMR][1000 genomes]
rs56846923	1.00[AMR][1000 genomes]
rs57293399	1.00[AMR][1000 genomes]
rs57580239	1.00[AMR][1000 genomes]
rs57594011	1.00[AMR][1000 genomes]
rs58255061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58818146	1.00[AMR][1000 genomes]
rs58874817	1.00[AMR][1000 genomes]
rs59905929	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59986473	1.00[AMR][1000 genomes]
rs60025350	1.00[AMR][1000 genomes]
rs60101829	1.00[AMR][1000 genomes]
rs60688180	1.00[AMR][1000 genomes]
rs60857098	1.00[AMR][1000 genomes]
rs61117920	1.00[AMR][1000 genomes]
rs61218510	1.00[AMR][1000 genomes]
rs61735318	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762904	chr11:32969258-33586535	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
2	nsv533840	chr11:33008192-33595324	Bivalent Enhancer Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv1044478	chr11:33008435-33656273	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv1050944	chr11:33043155-33656273	Flanking Active TSS Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	nsv540993	chr11:33043155-33656273	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
6	nsv529212	chr11:33053073-33641691	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
7	nsv869418	chr11:33053073-33662479	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
8	nsv521130	chr11:33068389-33602913	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
9	nsv1041680	chr11:33249367-33637249	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
10	nsv540997	chr11:33249367-33637249	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
11	nsv832112	chr11:33469782-33683052	Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33555200-33617600	Weak transcription	Fetal Brain Male	brain
2	chr11:33563200-33585200	Weak transcription	Brain Angular Gyrus	brain
3	chr11:33564800-33585000	Weak transcription	Brain Anterior Caudate	brain
4	chr11:33565200-33583600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:33566800-33581000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:33567000-33578400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:33567000-33579800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:33567000-33581000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:33567200-33576000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:33567600-33574800	Weak transcription	HSMM	muscle
11	chr11:33568000-33574600	Weak transcription	HMEC	breast
12	chr11:33568200-33606600	Weak transcription	HUVEC	blood vessel
13	chr11:33568400-33575200	Weak transcription	NHDF-Ad	bronchial
14	chr11:33568400-33578400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:33568400-33578400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:33568400-33578400	Weak transcription	Osteobl	bone
17	chr11:33568400-33578600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr11:33568600-33576800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:33569400-33577600	Weak transcription	Fetal Brain Female	brain
20	chr11:33569400-33578400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:33569400-33578400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr11:33569600-33574800	Weak transcription	Brain Germinal Matrix	brain
23	chr11:33569600-33578800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:33569800-33605000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:33571400-33581000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:33572600-33574600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr11:33573000-33578600	Weak transcription	HSMMtube	muscle
28	chr11:33574000-33578800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr11:33574200-33575400	Enhancers	NH-A	brain
30	chr11:33574400-33574600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:33574400-33574600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr11:33574400-33575800	Enhancers	NHEK	skin
33	chr11:33574400-33576200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr11:33574400-33576400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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