Variant report

Variant	rs55870060
Chromosome Location	chr9:101734072-101734073
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101725948..101728379-chr9:101730817..101734324,5	K562	blood:
2	chr9:101730419..101734076-chr9:101735799..101737834,3	MCF-7	breast:
3	chr9:101732694..101735644-chr9:101742746..101744409,2	MCF-7	breast:
4	chr9:101724200..101725970-chr9:101733611..101735855,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56150005	0.80[ASN][1000 genomes]
rs59544707	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6635	chr9:101728257-101773253	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101722200-101737200	Weak transcription	Gastric	stomach
2	chr9:101724000-101736200	Weak transcription	Pancreas	Pancrea
3	chr9:101728000-101749400	Weak transcription	Aorta	Aorta
4	chr9:101731000-101735800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr9:101731000-101737400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:101732200-101738000	Enhancers	Fetal Heart	heart
7	chr9:101732400-101734200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr9:101732600-101736200	Enhancers	Adipose Nuclei	Adipose
9	chr9:101732800-101735400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr9:101732800-101735600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
11	chr9:101733000-101734200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:101733000-101734200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:101733000-101734200	Enhancers	Placenta Amnion	Placenta Amnion
14	chr9:101733000-101734200	Flanking Active TSS	Stomach Smooth Muscle	stomach
15	chr9:101733000-101735400	Enhancers	Esophagus	oesophagus
16	chr9:101733000-101735600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr9:101733000-101735800	Enhancers	Fetal Stomach	stomach
18	chr9:101733000-101736600	Enhancers	Placenta	Placenta
19	chr9:101733000-101737000	Enhancers	K562	blood
20	chr9:101733200-101734200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:101733200-101734200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr9:101733200-101734400	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr9:101733200-101734400	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr9:101733200-101734400	Enhancers	NHDF-Ad	bronchial
25	chr9:101733200-101734600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr9:101733200-101735400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:101733200-101736200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr9:101733400-101734200	Enhancers	H1 Cell Line	embryonic stem cell
29	chr9:101733400-101734200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr9:101733400-101734200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr9:101733400-101734200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr9:101733400-101734200	Flanking Active TSS	Brain Anterior Caudate	brain
33	chr9:101733400-101734200	Flanking Active TSS	Brain Hippocampus Middle	brain
34	chr9:101733400-101734200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
35	chr9:101733400-101734200	Enhancers	Ovary	ovary
36	chr9:101733400-101734200	Bivalent Enhancer	HepG2	liver
37	chr9:101733400-101734200	Enhancers	HMEC	breast
38	chr9:101733400-101734400	Enhancers	Left Ventricle	heart
39	chr9:101733400-101734400	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr9:101733400-101735400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr9:101733400-101735400	Enhancers	Right Atrium	heart
42	chr9:101733600-101734200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
43	chr9:101733600-101734200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr9:101733600-101734400	Genic enhancers	Fetal Muscle Leg	muscle
45	chr9:101733600-101734400	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr9:101733600-101735400	Enhancers	Fetal Brain Male	brain
47	chr9:101733800-101734200	Flanking Active TSS	NHLF	lung
48	chr9:101733800-101734400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr9:101733800-101735600	Enhancers	Right Ventricle	heart
50	chr9:101733800-101736200	Enhancers	Duodenum Smooth Muscle	Duodenum

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