Variant report

Variant	rs59544707
Chromosome Location	chr9:101735671-101735672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101730074..101732090-chr9:101735331..101737344,2	K562	blood:
2	chr9:101734796..101736324-chr9:101740072..101741805,2	MCF-7	breast:
3	chr9:101725833..101728066-chr9:101734948..101737499,2	K562	blood:
4	chr9:101724200..101725970-chr9:101733611..101735855,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs55870060	0.94[ASN][1000 genomes]
rs56150005	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6635	chr9:101728257-101773253	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101722200-101737200	Weak transcription	Gastric	stomach
2	chr9:101724000-101736200	Weak transcription	Pancreas	Pancrea
3	chr9:101728000-101749400	Weak transcription	Aorta	Aorta
4	chr9:101731000-101735800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr9:101731000-101737400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:101732200-101738000	Enhancers	Fetal Heart	heart
7	chr9:101732600-101736200	Enhancers	Adipose Nuclei	Adipose
8	chr9:101733000-101735800	Enhancers	Fetal Stomach	stomach
9	chr9:101733000-101736600	Enhancers	Placenta	Placenta
10	chr9:101733000-101737000	Enhancers	K562	blood
11	chr9:101733200-101736200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr9:101733800-101736200	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr9:101734000-101735800	Enhancers	Colon Smooth Muscle	Colon
14	chr9:101734000-101736400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr9:101734000-101736400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr9:101734000-101736600	Enhancers	Rectal Smooth Muscle	rectum
17	chr9:101734200-101736200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr9:101734200-101736400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr9:101734200-101736600	Enhancers	Fetal Muscle Trunk	muscle
20	chr9:101734200-101737000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:101734200-101737000	Weak transcription	Ovary	ovary
22	chr9:101734200-101737400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr9:101734400-101736600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
24	chr9:101734400-101737400	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr9:101734600-101736400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr9:101734800-101735800	Enhancers	NHDF-Ad	bronchial
27	chr9:101734800-101740400	Enhancers	Left Ventricle	heart
28	chr9:101735000-101735800	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr9:101735000-101737400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr9:101735000-101738000	Flanking Active TSS	Stomach Smooth Muscle	stomach
31	chr9:101735200-101736200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
32	chr9:101735200-101737400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr9:101735400-101736200	Weak transcription	Right Atrium	heart
34	chr9:101735400-101736400	Weak transcription	Esophagus	oesophagus
35	chr9:101735400-101736400	Weak transcription	Fetal Brain Male	brain
36	chr9:101735400-101737000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr9:101735400-101737000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr9:101735400-101737000	Weak transcription	Brain Anterior Caudate	brain
39	chr9:101735400-101737000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr9:101735400-101737000	Weak transcription	Brain Substantia Nigra	brain
41	chr9:101735600-101736000	Weak transcription	Right Ventricle	heart
42	chr9:101735600-101736800	Weak transcription	Brain Cingulate Gyrus	brain
43	chr9:101735600-101737000	Weak transcription	Brain Hippocampus Middle	brain
44	chr9:101735600-101737200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr9:101735600-101737200	Genic enhancers	Fetal Muscle Leg	muscle

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