Variant report

Variant	rs56150005
Chromosome Location	chr9:101740006-101740007
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101739430..101741862-chr9:101743138..101745419,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10988495	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10988507	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10988510	0.96[EUR][1000 genomes]
rs10988521	0.94[EUR][1000 genomes]
rs2416664	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55870060	0.80[ASN][1000 genomes]
rs59544707	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv6635	chr9:101728257-101773253	Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101728000-101749400	Weak transcription	Aorta	Aorta
2	chr9:101734800-101740400	Enhancers	Left Ventricle	heart
3	chr9:101736000-101740400	Enhancers	Right Ventricle	heart
4	chr9:101736200-101740200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:101737800-101740600	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr9:101737800-101741400	Enhancers	Fetal Muscle Trunk	muscle
7	chr9:101737800-101741400	Enhancers	Fetal Muscle Leg	muscle
8	chr9:101737800-101742800	Enhancers	Adipose Nuclei	Adipose
9	chr9:101737800-101760800	Weak transcription	Gastric	stomach
10	chr9:101738000-101741000	Enhancers	Colon Smooth Muscle	Colon
11	chr9:101738200-101740800	Enhancers	Pancreas	Pancrea
12	chr9:101738400-101740200	Weak transcription	Fetal Brain Female	brain
13	chr9:101738800-101740600	Enhancers	Right Atrium	heart
14	chr9:101739000-101740400	Enhancers	Lung	lung
15	chr9:101739000-101740800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:101739000-101740800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr9:101739200-101740600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr9:101739200-101740800	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr9:101739200-101742000	Enhancers	Stomach Smooth Muscle	stomach
20	chr9:101739400-101740200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr9:101739400-101740800	Enhancers	Placenta	Placenta
22	chr9:101739600-101740200	Enhancers	Fetal Brain Male	brain
23	chr9:101739600-101740800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
24	chr9:101739600-101740800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr9:101739600-101740800	Enhancers	Fetal Heart	heart
26	chr9:101739600-101741600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr9:101739600-101742000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr9:101739800-101740200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr9:101739800-101740200	Weak transcription	Ovary	ovary
30	chr9:101739800-101740400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
31	chr9:101739800-101740800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr9:101739800-101740800	Enhancers	Esophagus	oesophagus
33	chr9:101740000-101740200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr9:101740000-101740400	Enhancers	Spleen	Spleen
35	chr9:101740000-101740800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr9:101740000-101746200	Weak transcription	Psoas Muscle	Psoas
37	chr9:101740000-101746400	Weak transcription	Fetal Stomach	stomach

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