Variant report

Variant	rs55875340
Chromosome Location	chr15:45991599-45991600
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10220737	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10220778	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11070468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12101481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55947970	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58124267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7178280	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv523136	chr15:45990780-46158407	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45983200-45991800	Weak transcription	A549	lung
2	chr15:45983200-45996000	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:45983400-45996800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr15:45983600-45996400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr15:45983800-45994600	Weak transcription	Ovary	ovary
6	chr15:45983800-45996200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr15:45984000-45994400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:45984200-45994200	Weak transcription	NHEK	skin
9	chr15:45984200-45995400	Weak transcription	Psoas Muscle	Psoas
10	chr15:45984200-45996200	Weak transcription	Fetal Stomach	stomach
11	chr15:45984200-45996200	Weak transcription	NHDF-Ad	bronchial
12	chr15:45984400-45996400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:45985200-45996200	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr15:45985400-45996400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr15:45985400-45996800	Weak transcription	HMEC	breast
16	chr15:45985600-45994400	Weak transcription	Pancreas	Pancrea
17	chr15:45985800-45994400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr15:45985800-45995800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr15:45985800-45995800	Weak transcription	GM12878-XiMat	blood
20	chr15:45985800-45996200	Weak transcription	Gastric	stomach
21	chr15:45985800-45996400	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr15:45985800-45996400	Weak transcription	Adipose Nuclei	Adipose
23	chr15:45985800-45996400	Weak transcription	Right Ventricle	heart
24	chr15:45986000-45992800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr15:45986000-45993800	Weak transcription	Primary B cells from peripheral blood	blood
26	chr15:45986000-45994000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr15:45986000-45994400	Weak transcription	Esophagus	oesophagus
28	chr15:45986000-45994800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr15:45986000-45996200	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr15:45986000-45996400	Weak transcription	Aorta	Aorta
31	chr15:45986000-45996400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr15:45986000-45996400	Weak transcription	Spleen	Spleen
33	chr15:45986000-45996600	Weak transcription	Colonic Mucosa	Colon
34	chr15:45986200-45996400	Weak transcription	Duodenum Mucosa	Duodenum
35	chr15:45986200-45996400	Weak transcription	Lung	lung
36	chr15:45986200-45996400	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr15:45986400-45994600	Weak transcription	Fetal Intestine Small	intestine
38	chr15:45986400-45996200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr15:45986600-45992200	Weak transcription	Primary B cells from cord blood	blood
40	chr15:45986800-45996000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr15:45987000-45994000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr15:45987000-45996400	Weak transcription	Liver	Liver
43	chr15:45987000-45996400	Weak transcription	Stomach Smooth Muscle	stomach
44	chr15:45987200-45993800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr15:45987800-45992200	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr15:45987800-45996200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr15:45988000-45994800	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr15:45988200-45996200	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr15:45988200-45996400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr15:45988200-45996400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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