Variant report

Variant	rs7178280
Chromosome Location	chr15:45998823-45998824
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11070468	0.83[ASN][1000 genomes]
rs12101481	0.83[ASN][1000 genomes]
rs55875340	0.83[ASN][1000 genomes]
rs55947970	0.83[ASN][1000 genomes]
rs58124267	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv523136	chr15:45990780-46158407	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45997000-46002800	Weak transcription	Spleen	Spleen
2	chr15:45997600-46002800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:45998000-45999600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:45998000-46000000	Weak transcription	Esophagus	oesophagus
5	chr15:45998000-46002200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:45998000-46003000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:45998000-46005000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr15:45998000-46007000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:45998200-46007000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr15:45998400-46002600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr15:45998400-46002800	Weak transcription	Colon Smooth Muscle	Colon
12	chr15:45998600-46002800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr15:45998600-46006800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:45998800-46003800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:45998800-46004600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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