Variant report

Variant	rs55882275
Chromosome Location	chr8:126487334-126487335
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16900614	1.00[ASN][1000 genomes]
rs16900615	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55987622	1.00[ASN][1000 genomes]
rs57863956	1.00[ASN][1000 genomes]
rs61002144	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61660593	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982940	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6987604	1.00[ASN][1000 genomes]
rs6987644	1.00[ASN][1000 genomes]
rs7003006	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008015	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126479400-126487400	Weak transcription	Liver	Liver
2	chr8:126479400-126489200	Weak transcription	Pancreas	Pancrea
3	chr8:126483000-126487400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:126483000-126489400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:126483000-126498200	Weak transcription	Right Atrium	heart
6	chr8:126483200-126487600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr8:126483200-126489000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:126483200-126489400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr8:126483400-126496600	Weak transcription	Hela-S3	cervix
10	chr8:126485800-126487600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:126485800-126487600	Enhancers	HMEC	breast
12	chr8:126485800-126487600	Enhancers	NHEK	skin
13	chr8:126486000-126487600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:126486800-126487600	Weak transcription	Lung	lung
15	chr8:126487000-126488000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr8:126487000-126488200	Enhancers	Adipose Nuclei	Adipose
17	chr8:126487000-126490000	Enhancers	Placenta	Placenta
18	chr8:126487200-126488000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:126487200-126492400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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