Variant report

Variant	rs61002144
Chromosome Location	chr8:126489248-126489249
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:126441723..126444081-chr8:126487390..126489417,3	MCF-7	breast:
2	chr8:126487669..126490463-chr8:126500662..126505453,4	MCF-7	breast:
3	chr8:126444118..126444925-chr8:126489102..126489871,3	MCF-7	breast:
4	chr8:126487201..126489383-chr8:126491210..126493652,2	K562	blood:
5	chr8:126488519..126490566-chr8:126531807..126533427,2	MCF-7	breast:
6	chr8:126487883..126490527-chr8:126491210..126493645,2	K562	blood:
7	chr8:126488058..126489576-chr8:126500538..126503490,2	MCF-7	breast:
8	chr8:126481379..126484101-chr8:126487149..126489863,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16900614	1.00[ASN][1000 genomes]
rs16900615	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55882275	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55987622	1.00[ASN][1000 genomes]
rs57863956	1.00[ASN][1000 genomes]
rs61660593	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982940	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6987604	1.00[ASN][1000 genomes]
rs6987644	1.00[ASN][1000 genomes]
rs7003006	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008015	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3345362	chr8:126489195-126491743	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126483000-126489400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:126483000-126498200	Weak transcription	Right Atrium	heart
3	chr8:126483200-126489400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:126483400-126496600	Weak transcription	Hela-S3	cervix
5	chr8:126487000-126490000	Enhancers	Placenta	Placenta
6	chr8:126487200-126492400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:126487400-126489600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:126487600-126491800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:126487600-126492000	Weak transcription	NHEK	skin
10	chr8:126487600-126493200	Weak transcription	HMEC	breast
11	chr8:126487600-126496600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:126488000-126497200	Weak transcription	Liver	Liver
13	chr8:126489000-126489600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr8:126489000-126489600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr8:126489000-126489600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr8:126489200-126489400	Enhancers	Pancreas	Pancrea
17	chr8:126489200-126489600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr8:126489200-126489600	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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