Variant report

Variant	rs61660593
Chromosome Location	chr8:126483900-126483901
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126479289..126481809-chr8:126483424..126485504,2	K562	blood:
2	chr8:126481379..126484101-chr8:126487149..126489863,2	MCF-7	breast:
3	chr8:126479289..126481809-chr8:126483424..126485504,3	K562	blood:
4	chr8:126439120..126443279-chr8:126483208..126489107,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16900614	1.00[ASN][1000 genomes]
rs16900615	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55882275	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55987622	1.00[ASN][1000 genomes]
rs57863956	1.00[ASN][1000 genomes]
rs61002144	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982940	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6987604	1.00[ASN][1000 genomes]
rs6987644	1.00[ASN][1000 genomes]
rs7003006	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008015	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891437	chr8:126470817-126629328	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126477400-126485000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr8:126479400-126487400	Weak transcription	Liver	Liver
3	chr8:126479400-126489200	Weak transcription	Pancreas	Pancrea
4	chr8:126481800-126484000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:126482000-126484200	Weak transcription	K562	blood
6	chr8:126482600-126484400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:126482800-126487000	Weak transcription	Placenta	Placenta
8	chr8:126483000-126484200	Enhancers	HMEC	breast
9	chr8:126483000-126484200	Enhancers	NHEK	skin
10	chr8:126483000-126484600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:126483000-126486000	Weak transcription	Lung	lung
12	chr8:126483000-126487400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr8:126483000-126489400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:126483000-126498200	Weak transcription	Right Atrium	heart
15	chr8:126483200-126484200	Weak transcription	Psoas Muscle	Psoas
16	chr8:126483200-126486400	Weak transcription	Fetal Muscle Leg	muscle
17	chr8:126483200-126486800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr8:126483200-126487000	Weak transcription	Adipose Nuclei	Adipose
19	chr8:126483200-126487200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:126483200-126487600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr8:126483200-126489000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr8:126483200-126489400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr8:126483400-126485600	Weak transcription	NH-A	brain
24	chr8:126483400-126485800	Weak transcription	Fetal Kidney	kidney
25	chr8:126483400-126486000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr8:126483400-126487000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr8:126483400-126496600	Weak transcription	Hela-S3	cervix
28	chr8:126483800-126485400	Weak transcription	A549	lung

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