Variant report

Variant	rs55882565
Chromosome Location	chr16:71428509-71428510
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs28407180	0.83[AMR][1000 genomes]
rs28591533	0.83[AMR][1000 genomes]
rs60096665	0.85[AMR][1000 genomes]
rs7192486	0.83[AMR][1000 genomes]
rs7200566	1.00[AMR][1000 genomes]
rs7206706	0.83[AMR][1000 genomes]
rs73571857	0.83[AMR][1000 genomes]
rs74025979	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs8054267	0.83[AMR][1000 genomes]
rs8055003	0.83[AMR][1000 genomes]
rs8056365	0.83[AMR][1000 genomes]
rs8063972	0.83[AMR][1000 genomes]
rs9925993	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71424200-71436000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:71428000-71428600	Enhancers	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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