Variant report

Variant	rs7200566
Chromosome Location	chr16:71426563-71426564
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16973239	1.00[MEX][hapmap]
rs16973241	1.00[MEX][hapmap]
rs28407180	0.83[AMR][1000 genomes]
rs28591533	0.83[AMR][1000 genomes]
rs55882565	1.00[AMR][1000 genomes]
rs60096665	0.85[AMR][1000 genomes]
rs7192486	0.83[AMR][1000 genomes]
rs7206706	0.83[AMR][1000 genomes]
rs73571857	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74025979	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs8054267	0.83[AMR][1000 genomes]
rs8055003	0.83[AMR][1000 genomes]
rs8056365	0.83[AMR][1000 genomes]
rs8063972	0.83[AMR][1000 genomes]
rs9925993	0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv572949	chr16:71352071-71426563	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7200566	MARVELD3	cis	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71422200-71426600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr16:71424200-71428000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr16:71424200-71436000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr16:71424600-71428000	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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