Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13331092	1.00[ASW][hapmap];0.93[LWK][hapmap];0.93[MKK][hapmap];0.87[YRI][hapmap]
rs16972292	0.87[LWK][hapmap];0.88[MKK][hapmap]
rs16973227	0.82[LWK][hapmap];0.93[MKK][hapmap];0.81[YRI][hapmap]
rs28407180	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28591533	1.00[AMR][1000 genomes]
rs55882565	0.83[AMR][1000 genomes]
rs7192486	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7200566	0.83[AMR][1000 genomes]
rs7202340	0.81[YRI][hapmap]
rs7206080	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7206706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73571857	1.00[AMR][1000 genomes]
rs8053156	0.83[AMR][1000 genomes]
rs8054267	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8055003	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8055025	0.93[YRI][hapmap]
rs8063972	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9925993	1.00[AMR][1000 genomes]
rs9927547	0.86[YRI][hapmap]
rs9927810	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv482374	chr16:71228600-71401617	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1062426	chr16:71307180-71423400	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv572949	chr16:71352071-71426563	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71371400-71374400	Enhancers	HMEC	breast
2	chr16:71371400-71374400	Enhancers	NHEK	skin
3	chr16:71371600-71373600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr16:71371600-71374000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr16:71371600-71374600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr16:71371800-71373600	Enhancers	A549	lung
7	chr16:71372400-71373800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr16:71373200-71373600	Enhancers	Hela-S3	cervix
9	chr16:71373200-71374200	Enhancers	Placenta	Placenta
10	chr16:71373400-71373600	Bivalent Enhancer	Brain Substantia Nigra	brain

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