Variant report
| Variant | rs9927547 |
|---|---|
| Chromosome Location | chr16:71465963-71465964 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr16:71463484..71466764-chr16:71493078..71496827,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000247324 | Chromatin interaction |
| ENSG00000167377 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs13331092 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs13335958 | 1.00[AMR][1000 genomes] |
| rs13338592 | 1.00[AMR][1000 genomes] |
| rs13338643 | 0.83[AMR][1000 genomes] |
| rs13339359 | 0.96[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs16973227 | 0.93[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs28436693 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28448676 | 1.00[AMR][1000 genomes] |
| rs59475931 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7202340 | 0.81[YRI][hapmap] |
| rs73584836 | 1.00[AMR][1000 genomes] |
| rs73589850 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8053156 | 0.83[AMR][1000 genomes] |
| rs8060811 | 1.00[AMR][1000 genomes] |
| rs9921203 | 0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs9926624 | 0.88[YRI][hapmap];0.83[AMR][1000 genomes] |
| rs9927810 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9940830 | 0.92[YRI][hapmap];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949461 | chr16:71196153-71579711 | ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 41 gene(s) | inside rSNPs | diseases |
| 2 | nsv1064435 | chr16:71440719-71488771 | Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:71461200-71467000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
