Variant report
| Variant | rs9921203 |
|---|---|
| Chromosome Location | chr16:71476320-71476321 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000167377 | Chromatin interaction |
| ENSG00000247324 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs11488925 | 1.00[EUR][1000 genomes] |
| rs13330482 | 1.00[EUR][1000 genomes] |
| rs13331092 | 0.86[YRI][hapmap];0.83[AMR][1000 genomes] |
| rs13331393 | 1.00[EUR][1000 genomes] |
| rs13335958 | 0.83[AMR][1000 genomes] |
| rs13337136 | 1.00[EUR][1000 genomes] |
| rs13338592 | 0.83[AMR][1000 genomes] |
| rs13339247 | 1.00[EUR][1000 genomes] |
| rs13339359 | 0.90[AFR][1000 genomes] |
| rs16972708 | 1.00[EUR][1000 genomes] |
| rs16973227 | 0.83[AMR][1000 genomes] |
| rs16973325 | 1.00[EUR][1000 genomes] |
| rs16973352 | 1.00[EUR][1000 genomes] |
| rs16973364 | 1.00[EUR][1000 genomes] |
| rs28436693 | 0.83[AMR][1000 genomes] |
| rs28448676 | 0.83[AMR][1000 genomes] |
| rs28455032 | 1.00[EUR][1000 genomes] |
| rs28693064 | 1.00[EUR][1000 genomes] |
| rs58909593 | 1.00[EUR][1000 genomes] |
| rs59258436 | 1.00[EUR][1000 genomes] |
| rs59475931 | 0.83[AMR][1000 genomes] |
| rs6499524 | 1.00[EUR][1000 genomes] |
| rs7201912 | 1.00[EUR][1000 genomes] |
| rs73571723 | 1.00[EUR][1000 genomes] |
| rs73584836 | 0.83[AMR][1000 genomes] |
| rs73584838 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73584840 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73589850 | 0.83[AMR][1000 genomes] |
| rs74025967 | 1.00[EUR][1000 genomes] |
| rs8051528 | 1.00[EUR][1000 genomes] |
| rs8060811 | 0.83[AMR][1000 genomes] |
| rs9927182 | 1.00[EUR][1000 genomes] |
| rs9927547 | 0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs9927810 | 0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs9931828 | 1.00[EUR][1000 genomes] |
| rs9939332 | 1.00[EUR][1000 genomes] |
| rs9940830 | 0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949461 | chr16:71196153-71579711 | ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 41 gene(s) | inside rSNPs | diseases |
| 2 | nsv1064435 | chr16:71440719-71488771 | Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:71474800-71478400 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr16:71475000-71479600 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 3 | chr16:71475200-71476400 | ZNF genes & repeats | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 4 | chr16:71475800-71476600 | Weak transcription | HepG2 | liver |
