Variant report

Variant	rs13339359
Chromosome Location	chr16:71479153-71479154
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13331092	0.83[AMR][1000 genomes]
rs13335958	0.83[AMR][1000 genomes]
rs13338592	0.83[AMR][1000 genomes]
rs16973227	0.83[AMR][1000 genomes]
rs28436693	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28448676	0.83[AMR][1000 genomes]
rs59475931	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73584836	0.83[AMR][1000 genomes]
rs73589850	0.83[AMR][1000 genomes]
rs8060811	0.83[AMR][1000 genomes]
rs9921203	0.90[AFR][1000 genomes]
rs9927547	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9927810	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9940830	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv1064435	chr16:71440719-71488771	Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71475000-71479600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr16:71476800-71482000	Weak transcription	HepG2	liver
3	chr16:71478200-71482200	Weak transcription	Fetal Heart	heart
4	chr16:71478200-71487800	ZNF genes & repeats	Adipose Nuclei	Adipose
5	chr16:71478400-71480600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr16:71478400-71481000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr16:71478600-71482000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr16:71479000-71482200	Weak transcription	Placenta Amnion	Placenta Amnion

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links