Variant report

Variant	rs59475931
Chromosome Location	chr16:71508654-71508655
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:71506966..71508827-chr16:71510994..71513448,2	MCF-7	breast:
2	chr16:71507450..71511299-chr16:71511883..71513820,5	K562	blood:
3	chr16:71501449..71503485-chr16:71506644..71509669,3	MCF-7	breast:
4	chr16:71494025..71497980-chr16:71506815..71510228,4	K562	blood:
5	chr16:71508246..71511064-chr16:71516547..71519494,2	K562	blood:
6	chr16:71498533..71500835-chr16:71506756..71508900,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157429	Chromatin interaction
ENSG00000247324	Chromatin interaction
ENSG00000167377	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13331092	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13335958	1.00[AMR][1000 genomes]
rs13338592	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13338643	0.83[AMR][1000 genomes]
rs13339359	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16973227	1.00[AMR][1000 genomes]
rs28436693	1.00[AMR][1000 genomes]
rs28448676	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584836	1.00[AMR][1000 genomes]
rs73589850	1.00[AMR][1000 genomes]
rs8053156	0.83[AMR][1000 genomes]
rs8060811	1.00[AMR][1000 genomes]
rs9921203	0.83[AMR][1000 genomes]
rs9926624	0.83[AMR][1000 genomes]
rs9927547	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9927810	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9940830	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71496400-71509400	Weak transcription	Small Intestine	intestine
2	chr16:71496600-71509200	Weak transcription	Fetal Intestine Large	intestine
3	chr16:71496600-71509400	Weak transcription	Colonic Mucosa	Colon
4	chr16:71496600-71509400	Weak transcription	Esophagus	oesophagus
5	chr16:71496600-71509400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr16:71496600-71511400	Weak transcription	Pancreas	Pancrea
7	chr16:71496800-71508800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr16:71496800-71508800	Weak transcription	Primary T cells from cord blood	blood
9	chr16:71496800-71508800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr16:71496800-71508800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr16:71496800-71508800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr16:71496800-71509000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr16:71496800-71509200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr16:71496800-71509400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr16:71496800-71509400	Weak transcription	Psoas Muscle	Psoas
16	chr16:71496800-71512000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr16:71496800-71512200	Weak transcription	Fetal Intestine Small	intestine
18	chr16:71497000-71511800	Weak transcription	Brain Substantia Nigra	brain
19	chr16:71497000-71517400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr16:71497000-71517400	Weak transcription	Fetal Heart	heart
21	chr16:71497000-71517600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr16:71497200-71509000	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr16:71497200-71509200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr16:71497200-71509400	Weak transcription	Colon Smooth Muscle	Colon
25	chr16:71497200-71509400	Weak transcription	Lung	lung
26	chr16:71497400-71508800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr16:71497400-71509000	Weak transcription	Right Ventricle	heart
28	chr16:71497400-71509200	Weak transcription	Primary B cells from cord blood	blood
29	chr16:71497400-71509200	Weak transcription	Brain Angular Gyrus	brain
30	chr16:71497400-71509200	Weak transcription	Brain Cingulate Gyrus	brain
31	chr16:71497400-71509200	Weak transcription	HepG2	liver
32	chr16:71497400-71509600	Weak transcription	Gastric	stomach
33	chr16:71497400-71509800	Weak transcription	Spleen	Spleen
34	chr16:71502800-71517400	Weak transcription	Dnd41	blood
35	chr16:71503400-71509000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr16:71503600-71509200	Weak transcription	Duodenum Mucosa	Duodenum
37	chr16:71503800-71509400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr16:71504000-71509400	Weak transcription	Fetal Lung	lung
39	chr16:71504400-71508800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr16:71504400-71509800	Weak transcription	Fetal Kidney	kidney
41	chr16:71504400-71512800	Strong transcription	Skeletal Muscle Male	skeletal muscle
42	chr16:71504600-71513600	Strong transcription	Stomach Smooth Muscle	stomach
43	chr16:71504800-71512800	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr16:71504800-71513000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr16:71505000-71513000	Strong transcription	Adipose Nuclei	Adipose
46	chr16:71505400-71508800	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr16:71505600-71509200	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr16:71505600-71509800	Weak transcription	GM12878-XiMat	blood
49	chr16:71505800-71509800	Enhancers	Muscle Satellite Cultured Cells	--
50	chr16:71506000-71509400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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