Variant report
| Variant | rs9926624 |
|---|---|
| Chromosome Location | chr16:71528753-71528754 |
| allele | A/C/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr16:71527669..71529806-chr16:71531377..71533861,2 | MCF-7 | breast: | |
| 2 | chr16:71491873..71496130-chr16:71527502..71532153,5 | K562 | blood: | |
| 3 | chr16:71527695..71528790-chr16:71570884..71571958,3 | MCF-7 | breast: | |
| 4 | chr16:71521453..71523218-chr16:71526940..71528952,2 | MCF-7 | breast: | |
| 5 | chr16:71494254..71496251-chr16:71526160..71529002,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000157429 | Chromatin interaction |
| ENSG00000247324 | Chromatin interaction |
| ENSG00000167377 | Chromatin interaction |
| ENSG00000261611 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs13331092 | 0.93[YRI][hapmap];0.83[AMR][1000 genomes] |
| rs13335958 | 0.95[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs13338592 | 0.83[AMR][1000 genomes] |
| rs16973227 | 1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs28436693 | 0.83[AMR][1000 genomes] |
| rs28448676 | 0.83[AMR][1000 genomes] |
| rs59475931 | 0.83[AMR][1000 genomes] |
| rs7202340 | 0.87[YRI][hapmap] |
| rs73584836 | 0.83[AMR][1000 genomes] |
| rs73589850 | 0.83[AMR][1000 genomes] |
| rs8060811 | 0.83[AMR][1000 genomes] |
| rs9927547 | 0.88[YRI][hapmap];0.83[AMR][1000 genomes] |
| rs9927810 | 0.88[YRI][hapmap];0.83[AMR][1000 genomes] |
| rs9940830 | 0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949461 | chr16:71196153-71579711 | ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 41 gene(s) | inside rSNPs | diseases |
| 2 | nsv906892 | chr16:71526720-71570413 | Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
